Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42850 497 / 2e-173 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT5G36110 230 / 1e-69 CYP716A1 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) AT5G45340 207 / 6e-61 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT2G29090 207 / 8e-61 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT4G19230 195 / 2e-56 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT3G19270 171 / 2e-47 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT3G50660 171 / 5e-47 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT4G36380 164 / 1e-44 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT5G38970 163 / 1e-44 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT1G12740 156 / 5e-42 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040055 [exp] 238 / 2e-72 AT5G36110 318 / 7e-104 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Lus10033308 [exp] 192 / 4e-55 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 191 / 9e-55 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10034768 [exp] 188 / 8e-54 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10019858 [exp] 172 / 2e-47 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10024495 [exp] 171 / 3e-47 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10012675 [exp] 169 / 9e-47 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10031391 [exp] 159 / 9e-47 AT2G42850 141 / 8e-41 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Lus10016515 [exp] 164 / 9e-45 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G060700 [exp] 575 / 0 AT2G42850 582 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Potri.011G001500 [exp] 253 / 4e-78 AT5G36110 331 / 8e-109 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.012G115000 [exp] 248 / 2e-76 AT5G36110 295 / 7e-95 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017800 [exp] 238 / 1e-72 AT5G36110 317 / 1e-103 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.011G001300 [exp] 236 / 1e-71 AT5G36110 332 / 2e-109 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.019G057901 [exp] 236 / 1e-71 AT5G36110 279 / 2e-88 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.006G085500 [exp] 228 / 1e-68 AT5G36110 573 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017633 [exp] 227 / 1e-68 AT5G36110 301 / 3e-97 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.007G002400 [exp] 227 / 3e-68 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G003000 [exp] 227 / 3e-68 AT5G36110 389 / 3e-131 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10010940 pacid=23172492 polypeptide=Lus10010940 locus=Lus10010940.g ID=Lus10010940.BGIv1.0 annot-version=v1.0 ATGTCCTATGAGATCATCATTGCCATTGTCACAACAACAACCTTAATCATACTTTCAACACGCTTGATAAGGATGATTGTCATCACCATATCCTCCAAAC CAAATGGGAAGAAGAAAAACAAGAAGCTCAACCTCCCGCCGGGAGAAATGGGGCTCCCGTGGATCGGAGAGACGATGGACTTCTACAAATCCCAACGCAA CAATCGCTTATTTGACCACTTCGTCCGCCCTCGAATGGCCAAGCACGGTAAGATCTTCAAGACAAGGCTAATGGGTTCCCCGACAATCGTGGTCAACGGT GCGGAAGCCAACAAGTTCTTCCTCTCCAACGAGTTCAAGCTCGTGGTCAGCTCGTGGCCGACCTCGTCGGTCCAACTGATGGGGAGGAACTCCATCATGG AGGCGAAGGGAGACAAGCACCGGACGGTCCGAGGTCTGATCGCCACGAGCGTGGGATACTCGTCGTTGGAGGTGCTGGTACCGAAGATGTGCAGCCTGGT GCAAGCCAGCCTGGCCGAACACTGGGGTGTGATTGATCACATCCCAAAGGAGGTTAGTTTGTACTACTGGACGAAAAAGTTGACTTTTAAGATCGTGTTT GAGTGCCTTTTGGGGATAAAGACGGAGTCAGGGACGTTGGAGATGTTTGAAAAAGTGCTAGAAGGGGTGTTCGCCCCTCCGGTAGGGTTTCCGGGGTCAA AGTTTTCGCGGGCAAAGAAGGCCAGAGAGGAGATTGAGAGAATGTTGTTGGAGGTTGTGAGAGAAAAGAGGAAGGAAGTGGAAGAAAAAACCACCTCCGC CCCCAGAGCGGACGGAGGAGGAAAAGAAGAGGAAGGACAGCTCATGTGGAGGCTCGTAAAGGCGATGATACAAGGAGAGATCACCGAGGAGGAAGTGGTT GACAATGTGGTGTTGCTCGTGTTTGCCGCTCATGATACAACGTCGTTTGTTGTTGCCATGATGTTCAAGATGTTGGCTCAACACCCCGATTGCTACAATC TCCTCTTGCAAGAGCATATCGAGATAGTGAAGAATAATGGAAACATTTTAAGTCTGGAAGAAGTAAAGAAGATGAAGTATACATGGGAAGTAGCACGTGA GAGCATGAGGTTATTCCCTCCCATCTTTGGCTCCTTCAGGAAAGCTGTTCAAGACATTGAATTCGATGGCTTCACCATTCCCAAAGGATGGAAGGTGTTG TGGACAGCGTACGGGACGCATTACAACGAGGAGTACTTCGAGGATCCGATGAGCTTCAAGCCGGTCCGGTTCCAACAACACAACAACATCCCACCCTACG TCTACGTGCCGTTTGGTGGAGGTCCCAGGGTCTGCGCCGGTAGCCAGCTGGCCAAGCTCAGCATCCTAGTACTGGTTCACTACGTTGTAACTGGTTACGA CTGGTCGCTTGTCCTACCAAACGAGGGAATCACAATGGATCCTCTTCCTTTTCCTTCTCATGGAATGCCCATCCGGATAACTCCCAAAGCTTGTAGCACA AGTAACCGAGTTTAA
AA sequence Show only first row Show all	>Lus10010940 pacid=23172492 polypeptide=Lus10010940 locus=Lus10010940.g ID=Lus10010940.BGIv1.0 annot-version=v1.0 MSYEIIIAIVTTTTLIILSTRLIRMIVITISSKPNGKKKNKKLNLPPGEMGLPWIGETMDFYKSQRNNRLFDHFVRPRMAKHGKIFKTRLMGSPTIVVNG AEANKFFLSNEFKLVVSSWPTSSVQLMGRNSIMEAKGDKHRTVRGLIATSVGYSSLEVLVPKMCSLVQASLAEHWGVIDHIPKEVSLYYWTKKLTFKIVF ECLLGIKTESGTLEMFEKVLEGVFAPPVGFPGSKFSRAKKAREEIERMLLEVVREKRKEVEEKTTSAPRADGGGKEEEGQLMWRLVKAMIQGEITEEEVV DNVVLLVFAAHDTTSFVVAMMFKMLAQHPDCYNLLLQEHIEIVKNNGNILSLEEVKKMKYTWEVARESMRLFPPIFGSFRKAVQDIEFDGFTIPKGWKVL WTAYGTHYNEEYFEDPMSFKPVRFQQHNNIPPYVYVPFGGGPRVCAGSQLAKLSILVLVHYVVTGYDWSLVLPNEGITMDPLPFPSHGMPIRITPKACST SNRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42850		CYP718	"cytochrome P450, family 718",...		Lus10010940 [exp]	0	1
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10005544 [exp]	2.4	0.9732
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	6.2	0.9715
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	8.3	0.9678
					Lus10025963 [exp]	10.0	0.9552
AT1G06930			unknown protein		Lus10009929 [exp]	10.6	0.9646
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10038959 [exp]	11.6	0.9604
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10035971 [exp]	12.1	0.9590
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043142 [exp]	12.6	0.9231
AT3G14470			NB-ARC domain-containing disea...		Lus10002609 [exp]	13.9	0.9591
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10038920 [exp]	14.1	0.9542

Compare expression of checked genes

Lus10010940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.