Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42840 154 / 1e-44 PDF1 protodermal factor 1 (.1) AT2G20515 43 / 7e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031390 [exp] 254 / 1e-83 AT2G42840 / protodermal factor 1 (.1) Lus10007351 [exp] 219 / 5e-70 AT2G42840 170 / 5e-51 protodermal factor 1 (.1) Lus10007352 [exp] 176 / 1e-55 AT2G42840 132 / 3e-39 protodermal factor 1 (.1) Lus10022928 [exp] 41 / 0.0003 AT2G20515 173 / 3e-56 unknown protein Lus10024890 [exp] 40 / 0.0007 AT2G20515 154 / 2e-48 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200900 [exp] 204 / 5e-64 AT2G42840 163 / 4e-48 protodermal factor 1 (.1) Potri.002G060800 [exp] 202 / 5e-64 AT2G42840 167 / 4e-50 protodermal factor 1 (.1) Potri.005G224600 [exp] 49 / 4e-07 AT2G20515 177 / 8e-58 unknown protein Potri.002G038200 [exp] 45 / 7e-06 AT2G20515 189 / 2e-62 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010941 pacid=23172503 polypeptide=Lus10010941 locus=Lus10010941.g ID=Lus10010941.BGIv1.0 annot-version=v1.0 ATGGCGGAAAAGCTCAACAACAAGCCATCTCTGACGTTGGTTCTGCTAGCTTTTGCTGCATTGCTCTCCCACGACTTAGCTTCTGCAACTTCCTCTGCCT TCATCGGAGATCAGAAGAACTACTACCCACCAGACCCTTCACATTCCGGCACCCCCCCTACCCCTCCATCAGGTTCACACACTCCTTCAACGCCGTCACA CGGTAGCCACTCACCCCCGCACCACCACACACCTTCTCACGGTGGCGGCGGATACCATCCCACTCCGTCAAATCCTCCGTCTGCTAACTGTGGGACCCCA CCCTCCGTCCCGACTCCGTCAACTCCAACTCCGTCTGTTCCAACGCCATACGTTCCAACTCCGTCTACTCCGTCAACTCCGACCCCCTCTGTTCCGACTC CGATCGATCCGTCAACGCCACCACCTTCCGGCGGCGGTGGATATTACCCTTCCCCTAGTACTCCACCGAGTGGAGGCATTCTCACTCCTCCGACACCCAT CATCGGCGGAACACCGCCGACGACTCCTTCGTCACCTCCGTTTGTCATTGACCCTAACTCACCCTTCTCATGCAACTACTGGAGGAGCCACCCGGCGATC ATATGGGGAGTGCTAGGATGGTGGGGGACTCTAGGCAGCGCATTCGGGGTTCCAACCGTGCCTGGTTTCGGAGCCTCCACGAGCCTTCCTCAAGCGCTCT CCAACACCCGAAATGACGGCTACGGACACCTCTACAGAGAAGGAACCGCGGCATTGCTCAACTCGATGGTGAGCCGGAGGTTCGCGTTCACGACGAACCA AGTGAGGGAGAGCTTCGTCACGGCGCTCGCTTCGAACAAGGCGGCCGCGGCTCAGGGGCACGTGTTCCAGATGGCCAATGAAGGACGACTCAAGCCCAGG AATTATTAG
AA sequence Show only first row Show all	>Lus10010941 pacid=23172503 polypeptide=Lus10010941 locus=Lus10010941.g ID=Lus10010941.BGIv1.0 annot-version=v1.0 MAEKLNNKPSLTLVLLAFAALLSHDLASATSSAFIGDQKNYYPPDPSHSGTPPTPPSGSHTPSTPSHGSHSPPHHHTPSHGGGGYHPTPSNPPSANCGTP PSVPTPSTPTPSVPTPYVPTPSTPSTPTPSVPTPIDPSTPPPSGGGGYYPSPSTPPSGGILTPPTPIIGGTPPTTPSSPPFVIDPNSPFSCNYWRSHPAI IWGVLGWWGTLGSAFGVPTVPGFGASTSLPQALSNTRNDGYGHLYREGTAALLNSMVSRRFAFTTNQVRESFVTALASNKAAAAQGHVFQMANEGRLKPR NY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10010941 [exp]	0	1
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	1.0	0.9824
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	2.0	0.9641
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10013931 [exp]	3.9	0.9512
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031689 [exp]	3.9	0.9595
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10009790 [exp]	4.5	0.9547
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10038071 [exp]	5.5	0.9503
AT5G11550			ARM repeat superfamily protein...		Lus10011691 [exp]	6.0	0.9425
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	6.2	0.9250
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10028181 [exp]	8.5	0.9377
AT3G05470			Actin-binding FH2 (formin homo...		Lus10031496 [exp]	8.7	0.9123

Compare expression of checked genes

Lus10010941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.