Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 536 / 0 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 534 / 0 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 521 / 2e-180 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 510 / 4e-176 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 500 / 2e-172 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 441 / 4e-149 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G46670 231 / 6e-69 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT4G15480 232 / 1e-68 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT5G59590 224 / 6e-66 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT5G59580 222 / 2e-65 UGT76E1 UDP-glucosyl transferase 76E1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031388 [exp] 791 / 0 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024583 [exp] 513 / 4e-177 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 510 / 5e-176 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10041055 [exp] 492 / 8e-169 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10032218 [exp] 483 / 1e-165 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 469 / 2e-160 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 452 / 2e-153 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 451 / 3e-153 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013923 [exp] 451 / 6e-153 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G098400 [exp] 572 / 0 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098300 [exp] 525 / 0 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 515 / 3e-178 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 513 / 2e-177 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 511 / 2e-176 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 510 / 2e-176 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 503 / 2e-173 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 497 / 3e-171 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 483 / 6e-166 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 481 / 8e-165 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01277 [flax] [poplar] Oleosin Oleosin CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10010943 pacid=23172443 polypeptide=Lus10010943 locus=Lus10010943.g ID=Lus10010943.BGIv1.0 annot-version=v1.0 ATGGATCAGCCACATCAGACGCAGTACGGTGGCACCATGCAAAACCAACCGCAGTACCAAACCAAGTCTTACCAGGCGGTCAAGGCGGCCACTGCTGCCA CCGCCGGTGGGTCCCTCCTCGTCCTCTCCGGTCTCATCCTTGTTGCCACCATCATTGCACTAACCATGGCCACTCCTCTCCTGGTCATCTTTAGCCCGGT TCTCGTCCCGGCTCTGATCACCGTTGGGTTGTTGATCACCGGGTTTTTGGCATCCGGGGGCTTCGGAGTGGCCGCCATCACAGTCTTGTCATGGATCTAT AGGTATGTGACCGGGAGGCACCCGGTGGGAGCGGATTCGCTGGACCAGGCGAGGATGAGGATCACCGGGAAAGCGAGGGAGATGAAGGATAGGGCGTCGG ATTTCGGGCAGCAGCATGTCACCGTCCATCCTATCAAAGCATCATTTTATTTCCGAACCCTTTCGACCAACACCACATTCAGCGATTTCCAACCAACAAT TAATGGGTTCGATGGAGCACTCAGAGAAACCAAAGCCTCATGCAGTGTGCATTCCATACCCGGCCCAAGGCCACATAACCCCAATGCTCAATCTCTCAAA ACTCCTCCACCACCGTGGCTTCCACGTCACCTTCGTCATCACCGAGTACAACCACAACCGCCTCCGCAAATCTCGCGCCGTCACCGACCTCCCGTCATTC CGGTTCGCAACAATCCCGGACGGCCTGCCACCCAGGACATCCCCGGCCTGTGTGAGTCCACGCGCCGGACTTGCTTGCCTCACTTCAAGGAGCTTCTGGC GAGGCTCAACGATACGGCGTCGTTGGAGGATGGTGTTCCGCCGGTGAGCTGTATCGTGTCGGACGGTGTGATGAGCTTCACTCTTGATGCCGCCGAGGAA TTGGGTGTCCCGGAAGTTTTGTTTTGGACTACGAGTGCTTGTGGATTCCTTGGTTATATGCACTACCGTGACTTGATCGACCGTGGCATCGTACCTCTCA AAGACGAAAGCTACTTAACAAACGGCTATCTCGACACAGTGATCGACTGGATCCCATCAATGAAGAACATCAAGCTCAAAGACCTCCCAACCTTCCTCCG AACCACCAACCGGGACGAATTCATGATCGAATTTTTCCTCGGAGAAACTGATCGAGCCAGAAGTCCAAAACCCGCCGCCATAATCCTCAACACATTCGAC GCTCTGGAGCACGACGTTCTCGCGTCACTATCCACATTGCTGGCCAAACCGGTTTACTCGGTCGGACCGTTAGAACTTCTGGCTGACGATCGGACCGTCA CGGATCCTTCCGTAAAGAACATTTCTTCCAGTCTTTGGAAGGAAGAGTCTGAGTGTCTCGATTGGCTCGAAACCAAACCGAAAAACTCGGTCGTGTACGT GAATTTCGGGAGCATAACCGTGATGACGAATGATCAGTTGGTGGAATTCGCTTGGGGGTTGGCGAATAGTAAGAAGGACTTTCTTTGGGTGATTAGGCCG GATCTTGTGGCGGGGGAGACGGCGGTTCTGCCGCCGGAGTTCGTGAAGGAGACCGGAGGCAGAGGACTTCTTGCTCGCTGGTGCCCGCAAGAGCAGGTTT TGAACCACGAGTCGGTGGCGGGGTTCTTGACGCACAACGGGTGGAATTCGACCCTCGAGAGCGTGTCCGCCGGAGTTCCGATGATCTGCTGGCCGTTCTT CGCCGAGCAGCAGACGAATTGTTGGTTTGCATGTAACGAGTGGGGGGTTGGGATGGAGATCAACAGTGACGTGAAGAGGGACGAGGTGGAAGCGCAGGTG AGGGAGTTGGTGGATGGTCGGAAAGGTGGAGAGATGAGAAAAAAAGCGGCGGAGTGGAAGAGGATGGCGGCGGAGGCGGTGACCGGAGGCGGCGGGTCGT CCTTTGCCAACTTGGATCAGTTGATTGAGCGTGTGCTTTTGTCTGGTTGTGGAAAAAGGAATGATTGA
AA sequence Show only first row Show all	>Lus10010943 pacid=23172443 polypeptide=Lus10010943 locus=Lus10010943.g ID=Lus10010943.BGIv1.0 annot-version=v1.0 MDQPHQTQYGGTMQNQPQYQTKSYQAVKAATAATAGGSLLVLSGLILVATIIALTMATPLLVIFSPVLVPALITVGLLITGFLASGGFGVAAITVLSWIY RYVTGRHPVGADSLDQARMRITGKAREMKDRASDFGQQHVTVHPIKASFYFRTLSTNTTFSDFQPTINGFDGALRETKASCSVHSIPGPRPHNPNAQSLK TPPPPWLPRHLRHHRVQPQPPPQISRRHRPPVIPVRNNPGRPATQDIPGLCESTRRTCLPHFKELLARLNDTASLEDGVPPVSCIVSDGVMSFTLDAAEE LGVPEVLFWTTSACGFLGYMHYRDLIDRGIVPLKDESYLTNGYLDTVIDWIPSMKNIKLKDLPTFLRTTNRDEFMIEFFLGETDRARSPKPAAIILNTFD ALEHDVLASLSTLLAKPVYSVGPLELLADDRTVTDPSVKNISSSLWKEESECLDWLETKPKNSVVYVNFGSITVMTNDQLVEFAWGLANSKKDFLWVIRP DLVAGETAVLPPEFVKETGGRGLLARWCPQEQVLNHESVAGFLTHNGWNSTLESVSAGVPMICWPFFAEQQTNCWFACNEWGVGMEINSDVKRDEVEAQV RELVDGRKGGEMRKKAAEWKRMAAEAVTGGGGSSFANLDQLIERVLLSGCGKRND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010943 [exp]	0	1
AT5G15430			Plant calmodulin-binding prote...		Lus10015733 [exp]	1.7	0.9336
AT1G15170			MATE efflux family protein (.1...		Lus10018135 [exp]	2.4	0.8723
AT1G32920			unknown protein		Lus10001526 [exp]	4.5	0.8680
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040924 [exp]	5.5	0.8596
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005551 [exp]	5.5	0.9057
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006840 [exp]	8.3	0.8343
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Lus10033450 [exp]	12.4	0.8562
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040923 [exp]	12.6	0.8368
					Lus10034718 [exp]	12.6	0.8551
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	19.0	0.8223

Compare expression of checked genes

Lus10010943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.