Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42790 845 / 0 CSY3 citrate synthase 3 (.1) AT3G58750 839 / 0 CSY2 citrate synthase 2 (.1) AT3G58740 709 / 0 CSY1 citrate synthase 1 (.1) AT2G44350 116 / 1e-27 CSY4, ATCS CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2) AT3G60100 114 / 3e-27 CSY5 citrate synthase 5 (.1) AT3G06650 46 / 6e-05 ACLB-1 ATP-citrate lyase B-1 (.1) AT5G49460 45 / 9e-05 ACLB-2 ATP citrate lyase subunit B 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031384 [exp] 906 / 0 AT3G58750 796 / 0.0 citrate synthase 2 (.1) Lus10019688 [exp] 112 / 1e-26 AT2G44350 784 / 0.0 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2) Lus10031385 [exp] 94 / 1e-22 AT3G58750 88 / 4e-21 citrate synthase 2 (.1) Lus10006943 [exp] 53 / 4e-07 AT2G44350 428 / 2e-148 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G089300 [exp] 867 / 0 AT3G58750 855 / 0.0 citrate synthase 2 (.1) Potri.014G141900 [exp] 856 / 0 AT3G58750 867 / 0.0 citrate synthase 2 (.1) Potri.001G230500 [exp] 112 / 3e-26 AT2G44350 792 / 0.0 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00285 [flax] [poplar] Citrate_synt Citrate synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010945 pacid=23172517 polypeptide=Lus10010945 locus=Lus10010945.g ID=Lus10010945.BGIv1.0 annot-version=v1.0 ATGTCCAGATTCGAAGACTCCTCCCCATCTTCCTCCGCCACCGCCAACGCCCGCCTGGCGGTGCTCGCAGCTCATTTGGCTGCAGCTGCTTCCGTGGAGT CGCCGTCTCCATTCACCGGCATCGAGCGGTTGGTCGTCTTGAGTAATGAAAATGATCGCACTCCCAACCTTAAAGGTACGCTCACCGTCGTCAACGAGAA GACCGGCCAGACTCACAAACTCGCGGTGTCCGAGCATGGCACCGTCAGTGCCTCCGATTTCAAGAAGATACCTGCAGGGAAGAGTGGGCAGGGACTTAAG CTATATGATCCAGGCTACCTAAACACTGCTCCTGTTCGGTCTGCTATTTCTTATATTGATGGTGATGAAGGTATCCTGAGATACAGAGGCTACCCAATCG AGGAGTTGGCTGAGAAAAGCACGTTTGTGGAAGTGGCTTACCTCATAATGTACGGAAATCTGCCATCTGAAACTCAATTGGCCGACTGGGAATTTGCCAT CTCTCAACATTCAGCTGTTCCACAAGGTGTTTTGAACCTCATCCAAGCAATGCCTCATGATTCGCATCCAATGGGTGTCCTTGTCACCGCTGTCAGTGCT CTTTCCATTTTCCATCCTGATGCTAACCCAGCTCTCAGGGGGCAAGATCTTTATAAGTCGAAGCAAGTGAGAGACAAGCAAATTGCACGCATCCTTGGAA AGGTGCCAACTATTGCAGCAGCAGCATATCTGAGGTTGGCAGGCAGGCCTCCTGTTCTGCCTTCTAGCAACCTCTCTTATTCAGAGAATTTCCTCTATAT GCTGGACTCATTGGGCAATAGGGCTTACAAACCTAATCCTCGATTAGCTCGAGTTCTAGATATACTTTTCATTCTTCATGCAGAACATGAAATGAATTGC TCGACTTCTGCTGCCCGGCATCTAGCCTCAAGTGGTGTTGATGTATACACCGCACTTGCCGGAGCTGTCGGAGCTCTATATGGGCCTCTCCATGGTGGTG CAAATGAGGCCGTACTAAAGATGCTTAGCGAGATCGGATCAGTCGAAAACATTCCAGAATTCATTGAGGGTGTGAAGAACAGGAAGCGAAAAATGTCCGG GTTCGGCCATCGTGTGTACAAAAACTATGATCCAAGGGCTAAAGTGATCAAGAAACTGGCAGACGAAGTGTTCTCCATCGTAGGGCGGGATCCTCTCATC GAGGTGGCCGTTGCTTTGGAGAAGGCTGCACTCTCTGACGAGTACTTTGTCAAGAGGAAGCTTTATCCTAATGTTGATTTCTACTCAGGGTTGATATACA GGGCAATGGGATTCCCTACAGAGTTCTTCCCTGTCCTATTCGCAATTCCTCGAATGGCCGGTTACTTAGCTCACTGGCGCGAGTCGCTCGATGATCCGGA CACAAAGATCATGCGACCACAACAGGTCTACGTCGGGGAGTGGCTGCGACACTACGCTCCGGTTCAGGAGCGCATTCCCTCGCAGGAGACGGACAAGCTC GGGCAGATTTCGGTGTCGAATGCGTCGAGGAGACGACTTGCTGGGTCTAGCGTGTAA
AA sequence Show only first row Show all	>Lus10010945 pacid=23172517 polypeptide=Lus10010945 locus=Lus10010945.g ID=Lus10010945.BGIv1.0 annot-version=v1.0 MSRFEDSSPSSSATANARLAVLAAHLAAAASVESPSPFTGIERLVVLSNENDRTPNLKGTLTVVNEKTGQTHKLAVSEHGTVSASDFKKIPAGKSGQGLK LYDPGYLNTAPVRSAISYIDGDEGILRYRGYPIEELAEKSTFVEVAYLIMYGNLPSETQLADWEFAISQHSAVPQGVLNLIQAMPHDSHPMGVLVTAVSA LSIFHPDANPALRGQDLYKSKQVRDKQIARILGKVPTIAAAAYLRLAGRPPVLPSSNLSYSENFLYMLDSLGNRAYKPNPRLARVLDILFILHAEHEMNC STSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLSEIGSVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIKKLADEVFSIVGRDPLI EVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYVGEWLRHYAPVQERIPSQETDKL GQISVSNASRRRLAGSSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42790		CSY3	citrate synthase 3 (.1)		Lus10010945 [exp]	0	1
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	2.4	0.9252
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10023392 [exp]	4.6	0.8955
AT1G77660			Histone H3 K4-specific methylt...		Lus10008325 [exp]	5.2	0.9093
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	8.9	0.8947
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	9.6	0.9145
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Lus10009909 [exp]	12.3	0.9065
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10010907 [exp]	13.9	0.8696
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10007766 [exp]	14.4	0.8692
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	14.8	0.8904
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005659 [exp]	15.9	0.8870

Compare expression of checked genes

Lus10010945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.