Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42800 391 / 8e-133 AtRLP29 receptor like protein 29 (.1) AT1G80080 189 / 2e-54 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT1G13230 170 / 5e-48 Leucine-rich repeat (LRR) family protein (.1) AT1G68780 168 / 5e-47 RNI-like superfamily protein (.1) AT4G28560 164 / 1e-45 RIC7 ROP-interactive CRIB motif-containing protein 7 (.1) AT3G25670 157 / 7e-43 Leucine-rich repeat (LRR) family protein (.1) AT4G20140 150 / 6e-39 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G07180 144 / 9e-37 ERL2 ERECTA-like 2 (.1) AT5G46330 142 / 3e-36 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 140 / 1e-35 ERL1 ERECTA-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031383 [exp] 599 / 0 AT2G42800 446 / 1e-152 receptor like protein 29 (.1) Lus10042458 [exp] 194 / 3e-57 AT1G80080 467 / 3e-163 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10026208 [exp] 192 / 4e-56 AT1G80080 500 / 2e-175 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10034261 [exp] 170 / 5e-48 AT1G13230 460 / 6e-161 Leucine-rich repeat (LRR) family protein (.1) Lus10034384 [exp] 166 / 3e-46 AT1G13230 455 / 5e-159 Leucine-rich repeat (LRR) family protein (.1) Lus10038948 [exp] 165 / 8e-46 AT1G68780 404 / 2e-138 RNI-like superfamily protein (.1) Lus10003624 [exp] 157 / 1e-42 AT4G28560 441 / 2e-152 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10027239 [exp] 141 / 3e-37 AT3G25670 402 / 6e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10004388 [exp] 145 / 6e-37 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211800 [exp] 377 / 1e-127 AT2G42800 474 / 7e-166 receptor like protein 29 (.1) Potri.001G202100 [exp] 181 / 2e-51 AT1G80080 597 / 0.0 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Potri.005G227600 [exp] 160 / 6e-44 AT4G28560 444 / 2e-153 ROP-interactive CRIB motif-containing protein 7 (.1) Potri.008G114700 [exp] 160 / 1e-43 AT1G68780 387 / 2e-131 RNI-like superfamily protein (.1) Potri.011G139700 [exp] 153 / 6e-40 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G008375 [exp] 149 / 2e-38 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.010G040200 [exp] 148 / 2e-38 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.019G120700 [exp] 148 / 3e-38 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 148 / 3e-38 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G008450 [exp] 147 / 4e-38 AT4G08850 462 / 9e-150 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10010946 pacid=23172494 polypeptide=Lus10010946 locus=Lus10010946.g ID=Lus10010946.BGIv1.0 annot-version=v1.0 ATGTTCTTCTTCTCTCCCAATCATCTCCTCTTCTTCTTCCTTCACCTCCTCCCATTATTGGTCCATGCAACCAACCACAACCAAAACACCAACAAACTTC AACTTCCCAAGGCCGAATCCGACACCCTTTTCGACATCATCGACTCCCTCTCCGGTCAATCCTGGCGCGCCACACACCTCAACCCCTGTCGGCAGTCCTC CGCCTGGCCGGGAATCCACTGTGTTCCAGGCTCAGACGGACACCTCCACATCTCCCATCTCGAATTCGGAACCCCGCCCAACCCGACTTGCAAACCGAAT TCCACATTCCCTCCCTTAATCTTCTCCCTCCCTTACCTCAACTCCCTCATTTTCTTCAAATGCTTCACTTCCACCAAAACCACTCTCCTCTTCCCCAAAT CTTCATCTTCTTCTTCACCACTCCAACAGCTTAGCCTCCGATCGAACCCGGCCCTAATCGGCCCCATCCCACCCGAAATCTCCTCCTTAAAATCACTCAA AATCCTCACTCTCTCCCAAAACCGCCTCACAGGATCAATCCCGCCGGCGATCGCCAAGCTAACCTCTCTCGTACATCTCGATTTGAGCTACAACATGTTA ACTGGTTCGATACCGGTTCAACTCGGCAGTCTCAAACCCCTAGCCGGTCTAGATTTGAGCTACAATTCCCTCGCCGGAGCCATCCCGCCGACGATCAGCG ACATGATTTTCCTCCAGAAGCTCGATGTGAGCTCGAATCTGCTCACGGGCGCCATCCCCGAAACTATAGGAAATCTCGTCAGTCTAGATTTTCTCGATTT AAGCCACAACCACCTAACCGGGAAATTCCCGTCGCAGATATCAAAGCTGCAGAGCCTACAGTACCTAATCATGGACGATAATCCGATGAACATTCCTCTC CCTGGAGAGATCGGGGAGCTTGTAAAGCTGCAAGAGCTCCGGCTAGCGAACTCCGGATACTGGGGAGTGATTCCGGCGAGCATTTCAAATCTGAAGAATT TAACCACTCTGTCGCTCGAGAACAACAAATTGACCGGGGAGATCCCGGAGAAGATTGAGGATCTTGCGAAGATTTATCATCTGAACTTGAGCAGGAACTC GCTCGCCGGGATCGTGCCGTTTGGAGAAGGGTTTGTGAGCAGATTGGGGAAGAACTTGGATTTGAGTGGGAATCCGGGGCTGTGTTTGAGGCCTGGCGAA ACGGCGACGTTTGGCGGAGGAGGAGCAATTGGGGTTTGTGGTGAAGGGATGATGAAGAAGAAGAAGAGTGGTGGTTTGATGAAAAGATCTGAAGGTTTGA CGATCGGAGTTTCGCCGGCGACTGTAATTGCCGCTCTCTGTTTGCATTTGTGCCAAGTGGCTGTTGTGTTCGTTTAA
AA sequence Show only first row Show all	>Lus10010946 pacid=23172494 polypeptide=Lus10010946 locus=Lus10010946.g ID=Lus10010946.BGIv1.0 annot-version=v1.0 MFFFSPNHLLFFFLHLLPLLVHATNHNQNTNKLQLPKAESDTLFDIIDSLSGQSWRATHLNPCRQSSAWPGIHCVPGSDGHLHISHLEFGTPPNPTCKPN STFPPLIFSLPYLNSLIFFKCFTSTKTTLLFPKSSSSSSPLQQLSLRSNPALIGPIPPEISSLKSLKILTLSQNRLTGSIPPAIAKLTSLVHLDLSYNML TGSIPVQLGSLKPLAGLDLSYNSLAGAIPPTISDMIFLQKLDVSSNLLTGAIPETIGNLVSLDFLDLSHNHLTGKFPSQISKLQSLQYLIMDDNPMNIPL PGEIGELVKLQELRLANSGYWGVIPASISNLKNLTTLSLENNKLTGEIPEKIEDLAKIYHLNLSRNSLAGIVPFGEGFVSRLGKNLDLSGNPGLCLRPGE TATFGGGGAIGVCGEGMMKKKKSGGLMKRSEGLTIGVSPATVIAALCLHLCQVAVVFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10010946 [exp]	0	1
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10031383 [exp]	1.7	0.9691
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10023295 [exp]	2.4	0.9581
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	2.4	0.9609
AT5G45650			subtilase family protein (.1)		Lus10020458 [exp]	5.9	0.9082
AT5G60370			unknown protein		Lus10023342 [exp]	7.9	0.9364
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10001534 [exp]	9.4	0.9392
AT1G07820			Histone superfamily protein (....		Lus10015492 [exp]	9.4	0.9299
AT3G58530			RNI-like superfamily protein (...		Lus10012294 [exp]	11.0	0.9344
AT3G12530		PSF2	PSF2 (.1.2)		Lus10002696 [exp]	12.0	0.9132
AT5G67200			Leucine-rich repeat protein ki...		Lus10036426 [exp]	15.0	0.9088

Compare expression of checked genes

Lus10010946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.