Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42780 199 / 3e-64 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031380 [exp] 363 / 3e-129 AT2G42780 191 / 5e-61 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G059000 [exp] 288 / 4e-99 AT2G42780 209 / 3e-67 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF06881 [flax] [poplar] Elongin_A RNA polymerase II transcription factor SIII (Elongin) subunit A
Representative CDS sequence Show only first row Show all	>Lus10010947 pacid=23172496 polypeptide=Lus10010947 locus=Lus10010947.g ID=Lus10010947.BGIv1.0 annot-version=v1.0 ATGACGAGGCGAGAAGCTCCTTCCTTGGTTGATCTTTGTATCAATGTAGCAATAGAGAATGTGAAGTACCTTGGAGATGTTGGAGAAACCGATTTGGACC TTCTCGGCCGGATCTTATGCCATTGTACGATTGAGCAGTTGACTCATATCGAGAAGAGCACTGTTGATCGTGATCTTAGCCCGGTGACTGATTCACTGTG GAAGAAATTCTATGAGATCAAGTTTGGTGAGCGTAGTACAAATCTTGTACTTGAAAGGATGAAGATGAAGAAAGTTTCGTTTCAATGGAAGCAATTATTC GAGGCAAAGTTGAAGGATGTTGCCGAGGCAGAGAATCAAGCAGTGGCTCGTCTTCGGGAACGATACAAAAATGAAGATGCAAGGAAACAAAGTCGGCAAA TCCAGGTCTGTTCAAAGGTTCCTCCTTCAAGCAATAAAAGAAGCTGGGGAGGAAGTGGTTACGATACTGGAAACTCGAAGAGCAACATCATGAAGAAAGC GAAAATCGATTTCCTGAAGAGTCGGGAACTGAAGAACATTGCAGCCATGAACAAGAACAAAAGCGCCGCACTAAGAAGAAGCAGAACTCCCACAATAATG AGGCCAAGTAGCAGCTTCACCGGAAGGAACCCTTCCGCTTCATCGTCATCAGCCCGTTCTGCAGCCTCGATACAGAGAAAATTCTAG
AA sequence Show only first row Show all	>Lus10010947 pacid=23172496 polypeptide=Lus10010947 locus=Lus10010947.g ID=Lus10010947.BGIv1.0 annot-version=v1.0 MTRREAPSLVDLCINVAIENVKYLGDVGETDLDLLGRILCHCTIEQLTHIEKSTVDRDLSPVTDSLWKKFYEIKFGERSTNLVLERMKMKKVSFQWKQLF EAKLKDVAEAENQAVARLRERYKNEDARKQSRQIQVCSKVPPSSNKRSWGGSGYDTGNSKSNIMKKAKIDFLKSRELKNIAAMNKNKSAALRRSRTPTIM RPSSSFTGRNPSASSSSARSAASIQRKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42780			unknown protein		Lus10010947 [exp]	0	1
AT3G52560		MMZ4 ,UEV1D ,UE...	MMS2 ZWEI HOMOLOGUE 4, ubiquit...		Lus10029415 [exp]	1.7	0.8522
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10036297 [exp]	4.9	0.8397
AT1G62620			Flavin-binding monooxygenase f...		Lus10024598 [exp]	7.4	0.7976
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10028820 [exp]	7.5	0.8251
AT1G43130		LCV2	like COV 2 (.1)		Lus10018868 [exp]	11.8	0.8127
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10040622 [exp]	12.6	0.7505
AT3G49800			BSD domain-containing protein ...		Lus10011556 [exp]	14.5	0.8139
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	14.6	0.8331
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10021385 [exp]	14.8	0.8251
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	15.0	0.7918

Compare expression of checked genes

Lus10010947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.