Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63910 571 / 0 FCLY farnesylcysteine lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031378 [exp] 867 / 0 AT5G63910 612 / 0.0 farnesylcysteine lyase (.1) Lus10031379 [exp] 103 / 8e-26 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G101700 [exp] 582 / 0 AT5G63910 521 / 0.0 farnesylcysteine lyase (.1) Potri.007G101600 [exp] 577 / 0 AT5G63910 568 / 0.0 farnesylcysteine lyase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07156 [flax] [poplar] Prenylcys_lyase Prenylcysteine lyase
Representative CDS sequence Show only first row Show all	>Lus10010948 pacid=23172470 polypeptide=Lus10010948 locus=Lus10010948.g ID=Lus10010948.BGIv1.0 annot-version=v1.0 ATGGCGTCTCATCTCTCTGTTCAACATCCTTCTCTGATCGTCATCATCCTCTGCCTCCTACCGTTCCTCGCTTCTCCTTCCCCTCCGCAACTAGATGTCT GCATCGTCGGAAGCGGAATCGCTGGCTCCTCCCTCTCTCATTTCCTCCGCCTCTACTCCAAAGATGCCACCGATCACCGCCAGTCAACTCTCCGTATCCG GATGTTCGAGCGTCATCCGGTCGTCGGCGGACGAATGGCCACCGTCACCATAGGAGGAAACACCTTCGAGGCTGGAGCTTCAATTCTTCATCCCAAGAAC CTCCACGCATCTAATTTCACTGAGCTGCTCAGCTTGAAGCGGAAGCTGCCTTCCAGCTCTGACGATGACTCCATGTCGCTAGGAATTTGGAATGGCGAGG ATTTCGTGTTCAAAACTCTGACGGTTGATTCCGATTTTCCGATTGTTCAGAGGATCGTCTCATGGGCTAATTCCCTTCGCATCTTCCTCCGATACGGCTT CTCGCTTCTGAAAATGGAGAGTTTCGTCGAGAGTACCGTTGATAAGTTTTTGAAGTACTACGAGAGTACTGAAGAGAGGCCGATTTTCCAAACTGTAGAG GAGATGCTAAAGTGGGCTGATCTATACGATCTCACCACTGAAACTTTGGAGGATCAGTTGATTCATGTAGGATTATCCCCTTTGCTCATTCATGAATTGG TCACTGTTATTACGAGAATTAACTACGGTCAAAGTTGCGAGATCAGCGGCCTGGCCGGAGCAGTTTCCTTGGCGGGATCAGGCGGAGGATTATGGGCAGT TGAAGGAGGGAACTGGCAGATGGCAGCTGGACTAATAAACATCTCAAAAGTGGAGCTGCACCTCAGTGAGAGGATATCTTCCGTTTCCAAATTCGCTGAT TATTACGAACTCAACTCGACGAAGGGGGATAGCCATGCATGTAATGTAACGGTGATAGCTTCTCCCTTAGACGAATTGGAGATTGAGTTTAAGCCTCCCG TTTCGATCCCTGAAAGGAAATTACAGCACACTTATACTACTTTCGTCAGGGGGTTGCTGAACCCGGTATATTTCGGGTTGAAATCTGTTTCAGATATACC GGAACTGGTGGGAACGATTGAAGATCCTAAGATTCCATTTTCAAGCATTTCGGTGCTCAAGCAACACAACGAGACAGACATGACTTACAAAGTTTTCTCT CGTGAAGAAATGTCAGATGCATTGCTAAATGAGATATTTAGCACAATAACGGATACTATCCGAATCAATTGGGGCGCTTACCCTCATTACAAGGCACCCG AAGTATTCGCACCTTTCATCTTGGACGATCATCACTTATACTACATTAATGCGTTCGAGAACGCAGCAAGCACCATGGAAACAAGTGCAGTTGCAGCTGA GAATATGGCACGTCTCATCTTGTCAAGAACTGTTGGGGATGTTTCGTCAACTTCATCGGGCACAAAGCTTGCTTTCCCTCATGAGGGGGAGGAGACTGGA ATTAATTCCTCCATCTTCTCTGCCGCTGCTTCATATGTTGATCAGAACAGTTTGTCTGACCAAAAGGACTTATCAAGATTGATTCCGATACTACCCTCTC CAACTCCAATCGGTGACGGTAACGATGATGGTGATGACGAACCAGCTCTTCCACCTCCGGTAAATGCCGGTACGAACATTATTCCTCCGCCGGACATGAA CCAGAACCGGCTGCCCCCTCTGCCTCCTCTGCCTCTGCTTCCAAGGCTCCCTCCATTGCCTCCTATGCCAGTGTTTCCGCCCTGGCCGCCCGGTCCTAAT TAA
AA sequence Show only first row Show all	>Lus10010948 pacid=23172470 polypeptide=Lus10010948 locus=Lus10010948.g ID=Lus10010948.BGIv1.0 annot-version=v1.0 MASHLSVQHPSLIVIILCLLPFLASPSPPQLDVCIVGSGIAGSSLSHFLRLYSKDATDHRQSTLRIRMFERHPVVGGRMATVTIGGNTFEAGASILHPKN LHASNFTELLSLKRKLPSSSDDDSMSLGIWNGEDFVFKTLTVDSDFPIVQRIVSWANSLRIFLRYGFSLLKMESFVESTVDKFLKYYESTEERPIFQTVE EMLKWADLYDLTTETLEDQLIHVGLSPLLIHELVTVITRINYGQSCEISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINISKVELHLSERISSVSKFAD YYELNSTKGDSHACNVTVIASPLDELEIEFKPPVSIPERKLQHTYTTFVRGLLNPVYFGLKSVSDIPELVGTIEDPKIPFSSISVLKQHNETDMTYKVFS REEMSDALLNEIFSTITDTIRINWGAYPHYKAPEVFAPFILDDHHLYYINAFENAASTMETSAVAAENMARLILSRTVGDVSSTSSGTKLAFPHEGEETG INSSIFSAAASYVDQNSLSDQKDLSRLIPILPSPTPIGDGNDDGDDEPALPPPVNAGTNIIPPPDMNQNRLPPLPPLPLLPRLPPLPPMPVFPPWPPGPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10010948 [exp]	0	1
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10042133 [exp]	2.2	0.8819
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10030666 [exp]	3.3	0.8892
AT1G36980			unknown protein		Lus10037355 [exp]	3.7	0.8845
AT4G13530			unknown protein		Lus10041074 [exp]	4.2	0.8836
AT1G77370			Glutaredoxin family protein (....		Lus10028355 [exp]	5.5	0.8750
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	6.3	0.8829
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020705 [exp]	6.9	0.8367
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10009373 [exp]	7.5	0.8426
					Lus10013206 [exp]	9.6	0.8372
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10029922 [exp]	10.0	0.8405

Compare expression of checked genes

Lus10010948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.