Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20820 417 / 6e-146 Leucine-rich repeat (LRR) family protein (.1) AT3G12610 404 / 8e-141 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT5G12940 392 / 6e-136 Leucine-rich repeat (LRR) family protein (.1) AT3G56370 154 / 3e-41 Leucine-rich repeat protein kinase family protein (.1) AT5G44700 154 / 3e-41 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G26380 151 / 3e-41 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 150 / 3e-41 Leucine-rich repeat (LRR) family protein (.1) AT4G20140 154 / 5e-41 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G05660 149 / 2e-39 AtRLP33 receptor like protein 33 (.1) AT2G15080 148 / 6e-39 AtRLP19 receptor like protein 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031377 [exp] 630 / 0 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10037705 [exp] 503 / 8e-180 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10031824 [exp] 416 / 2e-145 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 381 / 5e-133 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10002551 [exp] 383 / 4e-132 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10031254 [exp] 226 / 1e-73 AT3G20820 269 / 2e-90 Leucine-rich repeat (LRR) family protein (.1) Lus10020935 [exp] 153 / 9e-41 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 153 / 1e-40 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002753 [exp] 152 / 2e-40 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G064300 [exp] 481 / 5e-171 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 476 / 3e-169 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.001G017500 [exp] 414 / 1e-144 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 408 / 3e-142 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 155 / 4e-42 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.012G124200 [exp] 155 / 2e-41 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G021700 [exp] 152 / 2e-40 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 151 / 5e-40 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.006G261900 [exp] 151 / 5e-40 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.013G114200 [exp] 150 / 8e-40 AT1G34420 793 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010949 pacid=23172472 polypeptide=Lus10010949 locus=Lus10010949.g ID=Lus10010949.BGIv1.0 annot-version=v1.0 ATGGCTCATTGCTCAATCCTCCTTCCTCTTCTTCTGCTAATAGCCACTTCACTCGCCACCGCTGCATCCTCCTGCACTCCGTCCGACGTGGCGGCACTAC AAACATTCAAATCCTCCCTCACTGACCCTTACCTGGGCATATTCAACACCTGGACAGGCACCGACTGCTCCTCCTACTTCGGAGTCAGCTTCGACCCTTC CACCGGCCACATAATCGAAATCAACCTCCGCGGCGAATCGGAGGACCCCATCTTCACCAAATCGGGCCGCACCTCCGGATACATGACGGGGACGATCTCT CCCGCCATCTGCCAGCTTGACCAGCTCACAACGATCGTAATCGCAGATTGGAACGGCCTCTTTGGAGAGATACCCGATTGTATCACCTCCTTATCCAACC TCCGAATCCTGGATCTCGTTGGGAACAACCTAACCGGAAACATCCCTCCCCAAATCGGAAACCTCAAGCAGCTCGCGGTGCTCAATCTCGCTGATAACAG CCTCGTCGGCGAGATTCCTGATTCGATTACGGATCTGGAGAGCTTGAAGCACCTGGATCTCAGAAACAATCAGCTCTCGGGGAAGATCCCTGTGGATTTC GGGAAACTGAAGATGCTGAGTCGAGCTCTGCTGAGCAGGAACCAACTGGAGGGGTCGATTCCTGAGTCGGTTTCGAAAATGTATAGGCTGGCGGATTTGG ATCTATCCACGAACAAGATTTCTGGTTCGGTGCCGGAGTCGATCGGGGATATGAATGTGCTGTCGACGCTTAATCTGGACGGGAACATGATCGGCGGGGA GATTCCGGGGAAGCTGCTGGGGAGCAAAGGTTTGGGGATTTTGAATTTGAGCAGGAATGCTTTGGAGGGGAATATACCGGATACGTTTGGGCCCAACGGG TATTTTATGGTGTTGGACCTATCGTACAATAACTTGAAAGGCCCAATTCCGAAGTCTCTGTCGTCGGCCTCGTACGTTGGCCATTTGGACTTGAGCCACA ACCGTCTTTGTGGGGCGATTCCCGCCGGCGAGCCGTTTGATCGGCTGGGAGCGACGTCGTTTGGCTTCAATGATTGTTTGTGCGGGAACCCGCTTATGAC TTGTTAA
AA sequence Show only first row Show all	>Lus10010949 pacid=23172472 polypeptide=Lus10010949 locus=Lus10010949.g ID=Lus10010949.BGIv1.0 annot-version=v1.0 MAHCSILLPLLLLIATSLATAASSCTPSDVAALQTFKSSLTDPYLGIFNTWTGTDCSSYFGVSFDPSTGHIIEINLRGESEDPIFTKSGRTSGYMTGTIS PAICQLDQLTTIVIADWNGLFGEIPDCITSLSNLRILDLVGNNLTGNIPPQIGNLKQLAVLNLADNSLVGEIPDSITDLESLKHLDLRNNQLSGKIPVDF GKLKMLSRALLSRNQLEGSIPESVSKMYRLADLDLSTNKISGSVPESIGDMNVLSTLNLDGNMIGGEIPGKLLGSKGLGILNLSRNALEGNIPDTFGPNG YFMVLDLSYNNLKGPIPKSLSSASYVGHLDLSHNRLCGAIPAGEPFDRLGATSFGFNDCLCGNPLMTC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	0	1
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	1.0	0.9951
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10023610 [exp]	1.4	0.9742
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	1.7	0.9736
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	2.6	0.9612
AT5G14020			Endosomal targeting BRO1-like ...		Lus10012563 [exp]	2.8	0.9692
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	4.9	0.9579
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10038435 [exp]	5.3	0.9439
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	5.5	0.9554
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	5.5	0.9645
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	5.5	0.9646

Compare expression of checked genes

Lus10010949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.