Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07650 949 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 781 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 706 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 703 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 692 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 659 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 647 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 646 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 640 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G56145 561 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031374 [exp] 1572 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 687 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 680 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10038153 [exp] 630 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 608 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 589 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 513 / 1e-166 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 446 / 6e-144 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10026207 [exp] 226 / 1e-65 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G135500 [exp] 1137 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385200 [exp] 833 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.004G063200 [exp] 749 / 0 AT1G29750 1019 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.001G308600 [exp] 747 / 0 AT1G07650 912 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072300 [exp] 738 / 0 AT1G29750 1024 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.019G009700 [exp] 726 / 0 AT3G14840 894 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.019G009800 [exp] 723 / 0 AT3G14840 899 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072566 [exp] 711 / 0 AT1G29750 1210 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.019G008900 [exp] 710 / 0 AT3G14840 884 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.019G007900 [exp] 710 / 0 AT1G07650 883 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10010951 pacid=23172469 polypeptide=Lus10010951 locus=Lus10010951.g ID=Lus10010951.BGIv1.0 annot-version=v1.0 ATGATAGCTGATTTGGATGGTGGTGTTCTTTCTCTCTCAATCATCATCATCATCTGCTTCATTTCCTTTCCTTCCATTATTTCTGCAGATATTGATTCCA ACTACAAGCTCCACCCTTCTGAAGTGAAGGCATTGAGAGATATAGGGAAGAAACTTGGGAAGAAAGGGTGGGATTTTGGGGAAGATCCCTGCAGTGAAGA AGGGAGCTGGGATGTTAAGGATAGTAGAAAGGGTTTTGAGAACTCTGTGATTTGTGATTGTCCAATTAGTGCAAGTGCTAGTGCTGTTGCAGTTCATGGT AGTCTCAATCTCAGCAATTCCACCACTTCTGGTTCCACCTGCCATGTTACCTCTATATTGTTTAAGTCTCAAAATTTGTCTGGAACTCTCCCTCCTGAGT TCTCTAGACTTCGCTACCTTAAGAAACTGGAACTCAGTAAGAATATTCTGACTGGTACAATACCTCCTCAATGGGCTACCTTGCGTTTAGTCGAGCTCTA TCTTATGGGAAATCGGTTGTCTGGTGCATTTCCGAAAGTCCTTACCAACATGACCACTCTCAGAAACTTGAGCATTGAAGCAAATGAATTTTCAGGACCA TTACCTCCTGAAATCGGAAGAATGATCAATATCGAGAGACTTCATATCAATTCAAATGCGTTCACTGGGAAGCTGCCTCTTCAACTCTCCAAGTTGGTCA ACTTGACCGATATAAGGATCAGTGATAATAACTTCTCTGGAAAGATCCCAGATTTCATCAGCAAATTGACAAAGCTTGAAAAATTGCATATTCAAGGTTG CCCTATGGAAGGCCCTATACCTTCTAGCATTTCAGCCTTAACAAGTTTGACCGATCTGCGGATCACCGACCTAAAAGGTAGAGGATCTTCCTTTCCACCA CTTAGCACAATGGAGTCTATGAAGACACTGGTTCTACGGAACATCTTACTATCAGGAAAGATCCCAGAGTACCTGATTAAAATGAAAAAACTGAAAACCC TTGATCTTAGCTTCAACTGCTTGTCTGGAGAAATCCCGGAATCATTTGTCCTGCTCGCTAAAGTAGACATCATCTACTTTACTGGAAACAGACTCAGAGG ATCTGTGCCTCAATGGATTCTAGAGAGAAACAAGATTGTGTATGTTTATCTGCTTGGCATTTCAGCTTTCTACTGGAACTTCTTCTTCTTACGACGATTA ATGAACCGTCTTTTCATGCGTAGTGACGTTTCTTACAACAACTTCACTTGGGAAAGCTCAAGTCCGACAGAATGTCCTCGAGGAAGCGTAAATTTAGTGG AGAGTTATTCCTCCTCAACAACCAAACAAAGCAGAATACATCCCTGCTTGAGACAGAAGTTCCCATGTTGCCTTTCAAGAAAACAATATCGTTACCGGCT GCATATTAACTGTGGCGGTAAGGAAATGAACCTGAACAACACCTTCTACGATGCCGATCGGGAACCGAGAGGCGCTTCCATGTACTACTCGAGTCAGAAC TGGGCATTCAGCAGCACTGGACACTTTGTGGATAATGATCTAGATGCAGACACCTATATTCAATACAACAACTCTGCTATTTCCACCACCACCAATTTAT CCGCTAATAACAACTCAGAACTCTACACAACCGCGCGTGGATCGCCTATCTCGCTCACTTACTACGGGCTTTGCCTTGGCAATGGGAATTACACAGTGAG ACTCCATTTTGCAGAGATTGTTTTCACGAATGACAGTTCATTCATAGGCGTCGGGAAGCGAATATTCGATGTTTATGTACAGGACAAGTTGGTTCTGAAG GATTTCAACATCGAAGCGGAAGCTGGTGGCCCTGGTAGGCCAATAGTAAAGACATACACAGTTGCTATAACGAATAACACATTAAAGGTCCACTTTTATT GGGCTGGGAGAGGGACGACGGGGATACCAGTGAGAGGAGTTTATGGTCCTCTTATTTCTGCTATATCAGTCGATCCAAACTTCACTCCACCTTCACCCGA GGATAGCAGGAGGCATATCATTATCATTGCTGGAGCTGTTTCGGGAGCTCTTTCATTTGTGCTTCTGATTTTAGGTATCCTTTGGAAAAAAGGACTGTTG GGAGGCCAAGCAGCTGAGGAGAAAGAACTACGAGGACTACTAGACCAGCAAACAGGACTGTTCGCACTGAGACAGATAAAAGCTGCAACGAAGAATTTCG ATCCTGCTAACAAACTCGGAGAAGGTGGTTTCGGTTGTGTCTATAAGGTCGTTCGTGAACTCCATGGAGAACTGCCGGATGGAACAGTTATCGCTGTGAA GCAGCTGTCCTCAAAATCTAAGCAAGGAAATCGTGAATTCGTCACTGAGGTCGGCATGATATCTGGAATTCAGCACCCGAACATGGTAAAGCTGTATGGA TGCTGTGTTGAAGGGAACCAACTGATCCTCATATACGAGTACATGGAGAACAATTGTTTATCTCGCGCACTCTTCGCGAAGGATCCAGCAAGCAGGTTGA AACTAGACTGGCCAAGTAGGCAGAAAATATGCATAGGTGTCGCTAGGGGATTGGCTTACCTCCACGAGGAATCGCGAATCAGAGTTGTGCATAGAGACAT CAAGACAAGCAATGTGTTGCTTGATAAAGACCTGAATCCGAAAATCTCCGATTTCGGGTTGGCAAAGCTGCACGAAGATGAAGATACCCACATCAGCACA AGAGTGGCTGGAACCATGTGA
AA sequence Show only first row Show all	>Lus10010951 pacid=23172469 polypeptide=Lus10010951 locus=Lus10010951.g ID=Lus10010951.BGIv1.0 annot-version=v1.0 MIADLDGGVLSLSIIIIICFISFPSIISADIDSNYKLHPSEVKALRDIGKKLGKKGWDFGEDPCSEEGSWDVKDSRKGFENSVICDCPISASASAVAVHG SLNLSNSTTSGSTCHVTSILFKSQNLSGTLPPEFSRLRYLKKLELSKNILTGTIPPQWATLRLVELYLMGNRLSGAFPKVLTNMTTLRNLSIEANEFSGP LPPEIGRMINIERLHINSNAFTGKLPLQLSKLVNLTDIRISDNNFSGKIPDFISKLTKLEKLHIQGCPMEGPIPSSISALTSLTDLRITDLKGRGSSFPP LSTMESMKTLVLRNILLSGKIPEYLIKMKKLKTLDLSFNCLSGEIPESFVLLAKVDIIYFTGNRLRGSVPQWILERNKIVYVYLLGISAFYWNFFFLRRL MNRLFMRSDVSYNNFTWESSSPTECPRGSVNLVESYSSSTTKQSRIHPCLRQKFPCCLSRKQYRYRLHINCGGKEMNLNNTFYDADREPRGASMYYSSQN WAFSSTGHFVDNDLDADTYIQYNNSAISTTTNLSANNNSELYTTARGSPISLTYYGLCLGNGNYTVRLHFAEIVFTNDSSFIGVGKRIFDVYVQDKLVLK DFNIEAEAGGPGRPIVKTYTVAITNNTLKVHFYWAGRGTTGIPVRGVYGPLISAISVDPNFTPPSPEDSRRHIIIIAGAVSGALSFVLLILGILWKKGLL GGQAAEEKELRGLLDQQTGLFALRQIKAATKNFDPANKLGEGGFGCVYKVVRELHGELPDGTVIAVKQLSSKSKQGNREFVTEVGMISGIQHPNMVKLYG CCVEGNQLILIYEYMENNCLSRALFAKDPASRLKLDWPSRQKICIGVARGLAYLHEESRIRVVHRDIKTSNVLLDKDLNPKISDFGLAKLHEDEDTHIST RVAGTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07650			Leucine-rich repeat transmembr...		Lus10010951 [exp]	0	1
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10009217 [exp]	6.0	0.9192
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	7.5	0.9346
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10035230 [exp]	10.2	0.9168
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	14.5	0.9283
AT5G28850			Calcium-binding EF-hand family...		Lus10021174 [exp]	17.2	0.9088
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	21.4	0.9068
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	23.2	0.8992
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	26.9	0.9205
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	29.2	0.9031
AT5G66810			unknown protein		Lus10022461 [exp]	32.5	0.8830

Compare expression of checked genes

Lus10010951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.