Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37010 119 / 4e-28 unknown protein AT1G65710 102 / 5e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031372 [exp] 515 / 7e-180 AT5G37010 171 / 2e-47 unknown protein Lus10020782 [exp] 184 / 3e-50 AT5G37010 191 / 1e-52 unknown protein Lus10031373 [exp] 166 / 8e-48 AT1G65710 96 / 2e-23 unknown protein Lus10007363 [exp] 150 / 2e-38 AT5G37010 167 / 2e-44 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G147900 [exp] 166 / 1e-43 AT5G37010 195 / 3e-53 unknown protein Potri.012G145200 [exp] 157 / 2e-40 AT5G37010 212 / 3e-59 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010952 pacid=23172439 polypeptide=Lus10010952 locus=Lus10010952.g ID=Lus10010952.BGIv1.0 annot-version=v1.0 ATGGGGAAAACAGAGGTGAAGAAAGAAGTGTTATTACCGCAGGAGGGAGAGAGCGCGGGGAAGAAGGAGGTGTTCGTGATTAAGCATCGGAATAGCCATG AAAGTAATGGTAATTCCAGGGAGAAACAGTCGTCGCCGGAGGTTTCGGAAACGGATATTGGGAAGGTGAGTACTACTACGAGTATGGCGGTGAGGACTTC TAGCTGTACGAAGGAGGAAGTGGAAGCGATTCTGATTCAGTGTGGGAGGTTGAGCCGGAACAACTCTTTCGGAACACCTAGTAAGGCTGCCGGGGGCGGT GGTGGTTCGACGGCGGGGAGGAGGTACAGCGGGTCGAAAAGGAGCTTCGATTTCGACGAGCAGAATGACAGAGGGCGTGATGAGGAGGAAGAAGCTGGCG GAGATGGAGGGAGAGATGGTAGAAGGGAACGCCGTCACAGCCGATCTAGCCGGAATTCGTCTCCGGCGGGGTCTCAGGGGAGGAGGAGGAGGACGCCGAG CAGGGAGGCTGACCAGCGTTCGGGAAGTAGAGAGAGAGGAACTACTGCTGGAAATGGAAATGGACGGCGAGTTAGTAGATCTCCTGGGAGGAGATCGGAG AACACCGCCGCCGGTGGTGCTACACCGGCGGCGACAACGAACGCCGGCAATTCCAACAAGCCTGGGAAAATGGTCTCCGTCCCACCTACAGTTGGCTCTT CCTCATCATCATCCAACAAAACCAACACCAACATTAACAACGGCATCGTGGAAGCTCAGCAGACGGCGGCTAACGGAGTTAAACGGATTTCTGTGAAAAG AAACGGCGGGGAAACTGGTTTGAGGAGTGCAGCGGCGTCTCCGAGAGCGCGCTCACCTGCTAGAGGAGTTCGAAGTGATGCAGCCAATCAACAGCAGCCA TCGTTAAGCAGGAACTCGTCGAGAAAAGCAGAGCAATCGCCGAAAAGGAGGAATGCATTGGCAGAAATCGATCCCTCCTCGCTGGCGTATCCTCAGGCGA ATGGGAACAGAGTTGTGCAGGATAACAATGGTACTCAAATGGCTGCCAAAGAAACAATTCAGAAGCCGAATCCTGAAAGCCAGAAGAAGCAATCGCTTTC GAGAAGCAGATCAGCAAGGAGATCTAGAGATCTGGACATAAATGTTGAAGCTTTATTGAATCCACAGCCGGCTTCTTACACTTCGTTGCTGCTAGAAGAC ATTCAAAACTTCCACCAAAAGAAGAACGACAACAATGGCGGCAGCAATCCTCCGCCGCAGCCGCCGTTCCAGCTACCAGCTTGTGTGACGAAAGCGTGTT CGATAATGGAAGCAGTAGCTGATCTCAATTCCACCACAAGCTCCAACTTGTCATCCACATTGTCAGAAGATCATCATCGCAGGGTTGGTCTCAGGCAGCA ACCTCAACCTTTTGTTGTGGAATCTGAGGTGGTGACGATGGATGATCTGATGGAACCAAGCTTCCATAAGTATGTAACAGTGAGAAGAGGAGGATCGTCA TCGACGGAAGACATGGATAATAGGCAAGAAGAATCTTCAGGGAGCAACAGCTTTGTTGGCGGTGGACAGGGGAACTCGTACGGCTCCGGATGGGAGCCGA ATTCTGCGGATTCGACTGATCGATGGAGCTCGAGGGGGAAGGAGGAAGAGAAGGAGATGAATGTGAGCCCGGTTCCGGCCCCGCTGGGATTGGGAATAGG GCAGAGAGTTCATGGATTGAGTGAAAGAGCGGGAAGCAGGGAGATTGAAAGAGTAATGGAAGAGGCTAGAATGGGGTTTAGTGGGAAGGAGAATGGCAAG GGAAAGCTTGGTGGCAACAGGAGTCATCATCTACTAACTACTGCTGTTGCTTTCACGTAG
AA sequence Show only first row Show all	>Lus10010952 pacid=23172439 polypeptide=Lus10010952 locus=Lus10010952.g ID=Lus10010952.BGIv1.0 annot-version=v1.0 MGKTEVKKEVLLPQEGESAGKKEVFVIKHRNSHESNGNSREKQSSPEVSETDIGKVSTTTSMAVRTSSCTKEEVEAILIQCGRLSRNNSFGTPSKAAGGG GGSTAGRRYSGSKRSFDFDEQNDRGRDEEEEAGGDGGRDGRRERRHSRSSRNSSPAGSQGRRRRTPSREADQRSGSRERGTTAGNGNGRRVSRSPGRRSE NTAAGGATPAATTNAGNSNKPGKMVSVPPTVGSSSSSSNKTNTNINNGIVEAQQTAANGVKRISVKRNGGETGLRSAAASPRARSPARGVRSDAANQQQP SLSRNSSRKAEQSPKRRNALAEIDPSSLAYPQANGNRVVQDNNGTQMAAKETIQKPNPESQKKQSLSRSRSARRSRDLDINVEALLNPQPASYTSLLLED IQNFHQKKNDNNGGSNPPPQPPFQLPACVTKACSIMEAVADLNSTTSSNLSSTLSEDHHRRVGLRQQPQPFVVESEVVTMDDLMEPSFHKYVTVRRGGSS STEDMDNRQEESSGSNSFVGGGQGNSYGSGWEPNSADSTDRWSSRGKEEEKEMNVSPVPAPLGLGIGQRVHGLSERAGSREIERVMEEARMGFSGKENGK GKLGGNRSHHLLTTAVAFT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65710			unknown protein		Lus10010952 [exp]	0	1
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Lus10037155 [exp]	1.4	0.9794
AT4G14330			P-loop containing nucleoside t...		Lus10011804 [exp]	2.8	0.9702
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014235 [exp]	3.0	0.9713
AT5G44040			unknown protein		Lus10032776 [exp]	3.2	0.9633
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10038729 [exp]	3.2	0.9716
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	4.6	0.9668
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	4.9	0.9673
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Lus10019316 [exp]	6.3	0.9657
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10040248 [exp]	6.6	0.9625
					Lus10037590 [exp]	7.7	0.9690

Compare expression of checked genes

Lus10010952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.