Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02690 393 / 2e-134 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031371 [exp] 634 / 0 AT3G02690 440 / 3e-153 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G145300 [exp] 419 / 4e-144 AT3G02690 438 / 5e-152 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10010953 pacid=23172456 polypeptide=Lus10010953 locus=Lus10010953.g ID=Lus10010953.BGIv1.0 annot-version=v1.0 ATGGAGTGGTCATTGCTGCTACCCTCAGCCACTCACCCAATCCGTCACCGGAGACCCATTCAGCTGCACTCCTTCACCCATTCCGCCGCAGCATCGCCAT CTACTCGCTCCTCAACTGCCGCGCTCAATTTTCAGCTTTCAGCTCCTCCTTCCACATCCATAACAACCCGGCCGAATTGCAGACGAACATCTGCCGCGAT CAAGTGTAAAACCACCGGCGGCGGAGGAAGTGCTGAAGACACTACCGAATTAGCCTCGCTGGATTCCGACTCCTCGCCCTCGGATGTGGAGCACCTACTC CTCTCCGACGAAGACGGACAGCAACAACGAAGATCCGGATCGGCGATTGAGAAGCTCGTGGAGACAGGAGTGTTAATTTCTCCCTTCTTCTTCTGGGGCA CAGCAATGGTTGCGATGAAGGAGGTTATTCCCTTGACTGGTCCGTTCTTCGTCGCGTCGTTCCGTCTAATCCCGTCGGGATTCTTGCTGGTCGCGTTCGC TGCCGCCACTGGAAGGCCGTTTCCCTCCGGAATCAATGCTTGGCTCTCCATCACACTTTTTGCCATCATTGATGCTTCCTTCTTTCAGGGGTTTCTGGCT GAAGGATTGGAGAAGACTGCTGCAGGCTTAGGCAGCGTGATTATTGACTCCCAACCTCTGACCGTTGCAGTCCTTGCAGCATTGTTATTTGGTGAATCCA TTGGCCTGGTTGGGGCAATAGGGCTTTTTCTGGGAATTGTTGGACTCCTACTTCTGGAGGTTCCTGCACTTTCGTATGAAGCCACTGGTTTTTCATTGCT GGGAAGTGGAGAATTGTGGATGCTTCTTGCAGCGCAGAGCATGGCGGTTGGCACAGTCATGGTCCGCTGGGTTTCTAAATATTCAGATCCTGTCATGGCC ACTGGATGGCACATGGTGATTGGAGGTTTACCTCTTGTGGCTATCTCCGTCCTGAACAATGATCCTGCCTTTAATGGAAGTCTGAAGGACCTTGCTGCCA GTGACGTTCTAGCTCTACTCTACACCTCAATTTTCGGAAGTGCTGTCAGTTACGGTGTATACTACTACAATGCAACAAAAGGTTCGAATTTTACTCGAAC TTCGAAAATGGTTGATACAGCAAAGCATAGTGTTCAACTTCCAGATCTCTGGTTACTAATCCGCTTCCCGATATCGATTTCAGGTAGCCTGTTGACTCTC AGTTCACTCACATTCTTAACCCCGGTGTTCGCTTCCATTTTCGGATTTCTGTACCTCGGCGAGACCTTCGCCCCCGTGCAACTGGCTGGCGCAGCTGTTA CCCTTGTATCAATATACATGGTTAACTACCGCGATAAAGTCAAATGA
AA sequence Show only first row Show all	>Lus10010953 pacid=23172456 polypeptide=Lus10010953 locus=Lus10010953.g ID=Lus10010953.BGIv1.0 annot-version=v1.0 MEWSLLLPSATHPIRHRRPIQLHSFTHSAAASPSTRSSTAALNFQLSAPPSTSITTRPNCRRTSAAIKCKTTGGGGSAEDTTELASLDSDSSPSDVEHLL LSDEDGQQQRRSGSAIEKLVETGVLISPFFFWGTAMVAMKEVIPLTGPFFVASFRLIPSGFLLVAFAAATGRPFPSGINAWLSITLFAIIDASFFQGFLA EGLEKTAAGLGSVIIDSQPLTVAVLAALLFGESIGLVGAIGLFLGIVGLLLLEVPALSYEATGFSLLGSGELWMLLAAQSMAVGTVMVRWVSKYSDPVMA TGWHMVIGGLPLVAISVLNNDPAFNGSLKDLAASDVLALLYTSIFGSAVSYGVYYYNATKGSNFTRTSKMVDTAKHSVQLPDLWLLIRFPISISGSLLTL SSLTFLTPVFASIFGFLYLGETFAPVQLAGAAVTLVSIYMVNYRDKVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02690			nodulin MtN21 /EamA-like trans...		Lus10010953 [exp]	0	1
AT5G52030			TraB family protein (.1.2)		Lus10038884 [exp]	2.8	0.9065
AT2G31040			ATP synthase protein I -relate...		Lus10020702 [exp]	8.5	0.8725
AT3G14470			NB-ARC domain-containing disea...		Lus10004127 [exp]	10.4	0.8811
AT3G05410			Photosystem II reaction center...		Lus10004498 [exp]	13.9	0.8841
AT2G24060			Translation initiation factor ...		Lus10035814 [exp]	14.5	0.8744
					Lus10012544 [exp]	18.2	0.8637
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10021067 [exp]	18.2	0.8474
AT1G49380			cytochrome c biogenesis protei...		Lus10011311 [exp]	20.3	0.8790
AT3G14470			NB-ARC domain-containing disea...		Lus10004126 [exp]	22.6	0.8723
AT1G10350			DNAJ heat shock family protein...		Lus10030803 [exp]	24.5	0.8375

Compare expression of checked genes

Lus10010953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.