Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54230 763 / 0 SUA suppressor of abi3-5 (.1.2) AT5G06210 56 / 1e-08 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54580 55 / 3e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G34140 57 / 4e-08 D111/G-patch domain-containing protein (.1.2.3) AT5G26610 55 / 2e-07 D111/G-patch domain-containing protein (.1.2.3) AT4G00830 55 / 2e-07 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G08535 51 / 2e-07 D111/G-patch domain-containing protein (.1.2) AT1G18630 51 / 3e-07 GR-RBP6 glycine-rich RNA-binding protein 6 (.1) AT2G37510 50 / 9e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 49 / 1e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031369 [exp] 1319 / 0 AT3G54230 812 / 0.0 suppressor of abi3-5 (.1.2) Lus10014802 [exp] 65 / 1e-10 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003593 [exp] 63 / 4e-10 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10031446 [exp] 59 / 8e-09 AT5G26610 357 / 1e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10001513 [exp] 57 / 3e-08 AT5G26610 356 / 6e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10003980 [exp] 50 / 1e-06 AT2G37510 169 / 1e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043124 [exp] 52 / 2e-06 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023802 [exp] 52 / 2e-06 AT5G64200 217 / 1e-68 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10003957 [exp] 51 / 2e-06 AT5G64200 217 / 9e-70 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G081800 [exp] 976 / 0 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.017G138500 [exp] 948 / 0 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.017G138401 [exp] 286 / 6e-88 AT3G54230 166 / 1e-45 suppressor of abi3-5 (.1.2) Potri.011G130300 [exp] 55 / 1e-08 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 54 / 4e-08 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G165400 [exp] 56 / 5e-08 AT5G64200 202 / 2e-63 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.013G002100 [exp] 54 / 2e-07 AT5G26610 289 / 1e-97 D111/G-patch domain-containing protein (.1.2.3) Potri.006G208500 [exp] 52 / 2e-07 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G002700 [exp] 54 / 4e-07 AT5G26610 294 / 1e-99 D111/G-patch domain-containing protein (.1.2.3) Potri.002G095800 [exp] 52 / 5e-07 AT5G64200 204 / 5e-65 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10010955 pacid=23172466 polypeptide=Lus10010955 locus=Lus10010955.g ID=Lus10010955.BGIv1.0 annot-version=v1.0 ATGGATCCCGGTCGCTTTGGTCACCAGCAAGGATGGGATAATAACAGCGCTCTGGACGGGAATGGTGCTGTTCATGCTTCCAATTACCGGGGTAGTGGTT CATATGATGAGAGGAGGTGTCCTGATGAACGATACCCGAGGGGAAGTGCATTCCACAGAGATGAAAACTACCAAGACGCAAGAAATGAAGGGGGTTGGAC TCAATCAAGGCAAAGCTATGGAGATGAATATTCTCATGAGAGGGAGCCGAAAAGACGAGAAAAGGCAGCATACATGGACTCTTATGATGAGATGGATGGT TATCGTGAAAGAGGGCCTGGTTCGTATCGCGATCTTGATAGGTTTCAGGATGATTATGAAAGCGTTGAAGACTACCGTGATCATGAATATAGTAGACCTG CTAGGATCGGGGGACGTGATCGGGGTGACTATGGATATGATGATTATGACTACGGAGCTCATCATTCTAGGGAAAGTAGCCGAGACAGGGATTACGATTA TGGTCGACGCAGCCATGATTCAGACTATGATAGAGGCAGCAGCAGAAGAGATGGAGGTTGGAGGAGACGTGAATCCCGTGACCGAGAACTTGATAGGAGA GGGTCGAGCCATGATAGAGATCAGAGTCCACGGAGGCTGCATGAACGTTCCCGGTCTCGTGGACACGATGATCGTCCTAGATCAAGATCCCCTCGAGGTC GGAGTTATAGTAGGAGTCAACGAGAAGATAGCTATGAGGATGGTCAGTATGATAGGTTCGACAGGTGGAAGGATCATGATGATAGACGCCAGAGAGGGAA TTATGATGTGGCCCCGTCAGCAACTGTAGTTGTGAAAGGTCTGTCCGAGAAGACAACTGAGGAGGATCTAAATCAGATGCTTGCTGAATGGGGACCCCTT CGCCATGTACGTGTTATCAGAGAGCGGAATTCTGGAATCTCTCGTGGATTTGCTTTCATTGATTTCCCTTCTGTGGAAGCAGCACGAGCAATGATGGATA AAATTGGGGAGGAGGGTCTTGTACTAGATGGAAGAACGGTTTTCTTTGTGTACAGTAGTAGGCCAACTAGTGTGGGAGGTGGCCATTATGGTCAGGAGAA TAGGATAAGATCGGGTCAAAGTAGCCATAGAAGCACCACCGTTCCATCTGATTGGGTTTGCATTATTTGTGGATGTGTCAACTTTGCACGTCGAATGTCA TGTTTCCAGTGTAATGAGCCCCGGACAGATGATGCTCCGGCAGCAGATATGGCTTTATCCAATGGGACATCCTTAGGGAGGAAAGGGTTGGAGGCAGGTC CCACCCATGTCCTGGTTGTTCGTGGACTTCATGAGAATGCTGATGAGGAAATGCTTCGCTATGAATTCTCCAAACATGTTCCAATTAAGGATCTTCGCCT AGTTAGAGATAAATTTACTCATGTTTCAAGGGGATTTGCATTTGTTCACTTCCATTCGGCTGAAGGCTCAGTGATTGAAATGTCTTGTCTTGACTTCCGA CTTGTTCTTCAGGTAGAGGATGCTACTAAAGCTCTTGAAGCAACTAATGGAATGACTCTTGATAAGAATGGACAAGCTTTAAGAGTTGCATATGCAAAGA GCATTCTTGGTCCTGGTTCTGGAACATCTGGAGCAATGCAGTCAAGTAGCCTAGCAGCTGCGGCAATTGAGGCTGCTTCTTTTGCACAACAGTATGATGC TGTTGGATGGGCACCCAAGGAATACAATCCTGATGACAAAAACACTGCTGGCGGGCAGGAACAAACTATTGAACCAGCTGTGAGCCAAACCGATGGTTCT GCTCCACAATCTGGATTTGTTTGGGATGAAGCATCTGGTTACTACTATGATGCTGCCTCTGGATTCTACTACGATGGAAATACAGGTCTTTACTATGATG GGAAGAATGGTACATGGTACTCGTACGATGACCAATCTCAGCAGTACATTCCTTGCACGGATCAGAACGATGGCAAAAAGTCTGGGAAAGAGTCTGCAAA TTCCAACTCGGCTGATGGTTCTCATAACAGAAAAGCTGTTATCTCTGCACCTGCTGCTACCATTACCTCAGTTGAGAAAGCTGGCTCTTTGTCTGATGCG GTCCAGGCAGCTGCCGAAGCAGCACTAGCTGCAGAGAAGAAAGAGAAGGATAAGGCGAAAGAGATAAGACTTGCATCAAAAAGCAGCATTTTGGCTAACA AGAAGAAGATGAACAACGTATTGACTAAGTGGAAGCAGAGGAGTAATGAAGGGCAAGCAACCCGGGTGGCTCTCGATGATAATAATCAGTCAACCGGCTC AGTTGAAAATAAGCTTCTTTCAGCTGGATCTTCTATTAAAAGTAAGGTCAAATCGGATTCAATTATGCCCAAGGAGAATCCTATCTCAAGTCTAGGCCTC GAAGCCGTGGCACCAGCTGAACAGTTTGTCGGTTTAGAGACTCGAGTTAAGTCAGGGGGGAGTTTAATGGGTGTTATAAGAGGTTCCGGAAGAGGGGTTG TCAAATCGGATATGGGAACACCAGGTGGAATTAGATATACTAATGCCGCCAGTGTTTCAAGTGCATCGTTGAGTATGGATGCGTCCACTGTTACCTCATT CAGGACTGATGCATCTGCGTTGGGTTCTTACTCTACACCTTCAGTAACTGGTAGTGGTAAGAGGAGGTTTTCGGAAATGCCCCTTCCCTCCGGTTCTGCA AACAAGGAACCGAGTGTTACTTACAGAGACCGTGCAGCTGAAAGGAGGAGTTTATATGGCTCGTCTTCTGTTGGTGATGACCTATCAGATGCTGGAGTTG GAAGCTCAGATCGTGATTCTGCTTTGAGAAAGGATTCGATGCCTTTCCCTCCTGGCGTTGGAGGACGTGGGAGTGGCACTGGAGATGCAAATGTCAGTGT TCAGAGTTACGAGGTGATTACAAAGGAGAAGGCCATAGATGAAAGCAATGTGGGGAATCGCATGCTTCGAAATATGGGCTGGCACGAAGGCTTGGGATTA GGGAAGGACGGAAGTGGAATTGTAGAACCGGTACAAGCACAGGCATCAGAACACAGAGCAGGACTTGGGAGACAGCAGAAGAAGTTGGATCCAGCTCTTG AAGTGCAGGCCGGTGATAGCTACAAGACTCTGATTCACAAAAAGTCCATCGCCAGATTCCGCGAGATGTCCGAGACCGAGGCGCCCTAG
AA sequence Show only first row Show all	>Lus10010955 pacid=23172466 polypeptide=Lus10010955 locus=Lus10010955.g ID=Lus10010955.BGIv1.0 annot-version=v1.0 MDPGRFGHQQGWDNNSALDGNGAVHASNYRGSGSYDERRCPDERYPRGSAFHRDENYQDARNEGGWTQSRQSYGDEYSHEREPKRREKAAYMDSYDEMDG YRERGPGSYRDLDRFQDDYESVEDYRDHEYSRPARIGGRDRGDYGYDDYDYGAHHSRESSRDRDYDYGRRSHDSDYDRGSSRRDGGWRRRESRDRELDRR GSSHDRDQSPRRLHERSRSRGHDDRPRSRSPRGRSYSRSQREDSYEDGQYDRFDRWKDHDDRRQRGNYDVAPSATVVVKGLSEKTTEEDLNQMLAEWGPL RHVRVIRERNSGISRGFAFIDFPSVEAARAMMDKIGEEGLVLDGRTVFFVYSSRPTSVGGGHYGQENRIRSGQSSHRSTTVPSDWVCIICGCVNFARRMS CFQCNEPRTDDAPAADMALSNGTSLGRKGLEAGPTHVLVVRGLHENADEEMLRYEFSKHVPIKDLRLVRDKFTHVSRGFAFVHFHSAEGSVIEMSCLDFR LVLQVEDATKALEATNGMTLDKNGQALRVAYAKSILGPGSGTSGAMQSSSLAAAAIEAASFAQQYDAVGWAPKEYNPDDKNTAGGQEQTIEPAVSQTDGS APQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGKNGTWYSYDDQSQQYIPCTDQNDGKKSGKESANSNSADGSHNRKAVISAPAATITSVEKAGSLSDA VQAAAEAALAAEKKEKDKAKEIRLASKSSILANKKKMNNVLTKWKQRSNEGQATRVALDDNNQSTGSVENKLLSAGSSIKSKVKSDSIMPKENPISSLGL EAVAPAEQFVGLETRVKSGGSLMGVIRGSGRGVVKSDMGTPGGIRYTNAASVSSASLSMDASTVTSFRTDASALGSYSTPSVTGSGKRRFSEMPLPSGSA NKEPSVTYRDRAAERRSLYGSSSVGDDLSDAGVGSSDRDSALRKDSMPFPPGVGGRGSGTGDANVSVQSYEVITKEKAIDESNVGNRMLRNMGWHEGLGL GKDGSGIVEPVQAQASEHRAGLGRQQKKLDPALEVQAGDSYKTLIHKKSIARFREMSETEAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10010955 [exp]	0	1
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	3.3	0.8427
AT5G23490			unknown protein		Lus10004286 [exp]	6.7	0.7815
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10009830 [exp]	7.7	0.7527
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033817 [exp]	7.7	0.7876
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10022423 [exp]	8.5	0.7924
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024136 [exp]	9.9	0.7576
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002604 [exp]	10.4	0.7382
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	10.9	0.7660
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	11.1	0.7862
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Lus10012755 [exp]	12.4	0.7478

Compare expression of checked genes

Lus10010955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.