Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17310 659 / 0 AtUGP2, UGP2 UDP-glucose pyrophosphorylase 2 (.1.2) AT3G03250 656 / 0 AtUGP1, UGP1, UGP UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031365 [exp] 789 / 0 AT3G03250 662 / 0.0 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1) Lus10020788 [exp] 730 / 0 AT5G17310 781 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Lus10007370 [exp] 730 / 0 AT5G17310 785 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Lus10041971 [exp] 290 / 2e-91 AT5G17310 332 / 6e-107 UDP-glucose pyrophosphorylase 2 (.1.2) Lus10031368 [exp] 74 / 3e-16 AT3G03250 49 / 3e-08 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144700 [exp] 673 / 0 AT5G17310 782 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Potri.004G074400 [exp] 664 / 0 AT5G17310 759 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Potri.013G070001 [exp] 317 / 6e-102 AT3G03250 375 / 9e-124 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1) Potri.004G074750 [exp] 223 / 4e-72 AT5G17310 222 / 2e-72 UDP-glucose pyrophosphorylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01704 [flax] [poplar] UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence Show only first row Show all	>Lus10010957 pacid=23172525 polypeptide=Lus10010957 locus=Lus10010957.g ID=Lus10010957.BGIv1.0 annot-version=v1.0 ATGGCTGTCGCTACCGAGAAACTTTCCGCCTTGGAACCTGCCGTAGCCGCTCTCGATCAGATCAGTGAGAGCGAGAAGAATGGCTTCATCAGCCTCGTCT CTCGCTATCTCAGTGGTGAAGCCGACCAGGTGGAATGGAGTAAGATTAAGACCCCTACCGATGAGATTGTGGTTCCCTACGACACATTGACTCCTCTCTC CGATGATCCAGCGGAATCCAAGAGTCTTCTTGATAAGCTGGTTGTCCTAAAGCTGAATGGCGGTTTGGGTACAACGATGGGCTGCACCGGGCCTAAATCT GTGATTGAAGTCCGTAATGGATTAACGTTCCTTGACCTCATTGTCATGCAGATTGAGAATCTCAATAACAAATTCGGATGTAAGGTTCCGCTGCTTTTGA TGAACTCATTCAACACGCATGATGACACATCGAAGATTGTTGAGAAGTACACAAAAGCAAATGTAGAGATCCATACATTTAATCAGAGTCAGTACCCTCG TGTAGTTGCTGAGGATTTCTTGCCTTTGCCAAGCAAGGGACATGCAGGCAAGGATGGATGGTATCCTCCTGGACATGGTGATGTTTTTCCATCCTTGAAG AACAGCGGCAAGCTTGATTTATTGTTGTCTCAGGGTAAAGAGTATGTGTTCGTTGCCAACTCCGATAACCTTGGAGCTGTCGTAGATTTGAAAATTTTAA GTCACCTGATCAGAAACAAGAATGAGTACTGCATGGAGGTTACACCCAAAACCTTGGCCGATGTCAAGGGTGGTACCCTCATTTCTTATGAAGGGAAAGT TCAGCTTCTGGAAATAGCACAGGTCGCTGACGAACATGAAGTTGATGGCATCAAGGTTCTTCAGCTAGAAACCGCAGCTGGTGCAGCAATTAAGTTCTTC GACAAAGCAATCGGCATCAACGTTCCTCGCTCACGCTTCCTTCCTGTCAAGGCAACTTCAGATTTGCTCCTTGTGCAGTCTGACCTCTACACCGTTGTGG ACGGGTACGTCACTCGCAATGACGCGAGAACGAATCCTCAGAATCCCTCCATTGAACTCGGCCCAGAGTTCAAGAAGGTTGGCGATTTCTTGGGGCGGTT CAAGTCGATCCCGAGCATCATTGAGCTCGACAGCGTCAAGGTCGCCGGCGACGTATGGTTCGGCGTTGGAATTAAGCTCAAGGGGAAAGTGACCATAACA GCTGGGGAGAAGTTGGAACTACCCGACCATTCTGTTATACAGAATAAGGACATCAAGGGCCCAGGGGATCTGTAG
AA sequence Show only first row Show all	>Lus10010957 pacid=23172525 polypeptide=Lus10010957 locus=Lus10010957.g ID=Lus10010957.BGIv1.0 annot-version=v1.0 MAVATEKLSALEPAVAALDQISESEKNGFISLVSRYLSGEADQVEWSKIKTPTDEIVVPYDTLTPLSDDPAESKSLLDKLVVLKLNGGLGTTMGCTGPKS VIEVRNGLTFLDLIVMQIENLNNKFGCKVPLLLMNSFNTHDDTSKIVEKYTKANVEIHTFNQSQYPRVVAEDFLPLPSKGHAGKDGWYPPGHGDVFPSLK NSGKLDLLLSQGKEYVFVANSDNLGAVVDLKILSHLIRNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVADEHEVDGIKVLQLETAAGAAIKFF DKAIGINVPRSRFLPVKATSDLLLVQSDLYTVVDGYVTRNDARTNPQNPSIELGPEFKKVGDFLGRFKSIPSIIELDSVKVAGDVWFGVGIKLKGKVTIT AGEKLELPDHSVIQNKDIKGPGDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	0	1
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	1.7	0.9437
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10042497 [exp]	2.4	0.9393
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	3.0	0.9346
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10027266 [exp]	4.0	0.9338
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031365 [exp]	5.1	0.9089
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030899 [exp]	5.3	0.9167
AT1G72480			Lung seven transmembrane recep...		Lus10008125 [exp]	6.3	0.9305
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	7.7	0.9301
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10038146 [exp]	8.2	0.9057
AT5G19760			Mitochondrial substrate carrie...		Lus10007883 [exp]	8.4	0.9154

Compare expression of checked genes

Lus10010957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.