Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02710 711 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031364 [exp] 909 / 0 AT3G02710 772 / 0.0 ARM repeat superfamily protein (.1) Lus10026721 [exp] 176 / 1e-52 AT3G02710 158 / 5e-47 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G076600 [exp] 718 / 0 AT3G02710 696 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08216 [flax] [poplar] CTNNBL Catenin-beta-like, Arm-motif containing nuclear
Representative CDS sequence Show only first row Show all	>Lus10010958 pacid=23172450 polypeptide=Lus10010958 locus=Lus10010958.g ID=Lus10010958.BGIv1.0 annot-version=v1.0 ATGGAATTGCCGAGTTCTCGTAGCCGCAACAACCCCAAACGAAAGCGTGAACCCCCCTCGCCTCCTAGGTCCCGTCCGCCGCCGAACTTCTACGATGACG GCGACGAAGCTGGAGGAGTCGTTGATACGGGAAACAATGGAAACGATGTCGATCTTAGTCTGCTGGAAGCTGTGGAGAAGTCACAGAACGTCGTCGAAGC CTTAGACAACCGTACATTGAAGAAGCTAGTTCTCTCATTCGAGCGGCGATACAAGGAGAACATCGAGGCTCGACTCAAGTATCCTGACCAGCCGGATCGG TTTTCTGATTCCGAGGTGGAACTCCATTTGGAGCTCGAGAAGCTTAGAGTGCTCGCCGGAGGGCCTGAACTGTATCCGGACCTCGTCGGTCTCGGCGCGA TTCCTTCTATCTTAGGACTTCTCTCGCATGACAACACTGATATCGCGATCGATGTGGTGCAGTTGCTCCAGGATCTTACAGACGAGGACGTTCTGGAGGA CAACGACGAACCGGCTAAGGTTCTGGTGGATGCGCTTGTGGAGAACAATGTGTTGGAGCTTTTGGTTCAGAATATGCAGAGATTGTCCGATACGGATCCG GATGAGATGGCTGCAGTTTACACTTCGCTGGCTACGATTGAGAATCTCATTGAGGTGAAGCCTGCTGTGGCGGAGATGGTGTGCGAGAGGACGAAGCTGC TCAGGTGGCTGCTCGGGAAGATCAAAGTGAGGGAATTCGACAGTAACAAGCAGTATGCATCTGAGATATTAGCCATCTTGTTGCAGAATAGCACGGCCAA TCAGAAGAAGTTGGGGCAGATGAACGGAGTGGATGCGGTTTTGCAGGCGGTGGCCATGTACAAGTCCAAGGATCCTAAGAGCTCCGATGAAGAGGAAATG GTGGAGAATTTGTTTGATTGCTTGTGTTGTTTGCTGATGCCTTTGGAGAACAAGGAGAGGTTTGTCATGGCGGAAGGTGTGGAGTTGATGATTATCATTA TGAAGCAAAAGAAGTCTGCTTACAGTTCAGCTATTAGAGCTCTTGATTTCGCCATGACAAAGTATCCACCAGCTTGCGAGCGGTTTGTTGATGTTCTGGG TTTGAAGACTGCATTCGCTGCTTTCATGGACTTCCATATCTTTTGCTTACAGATTCCAATGAGCAAGAAGAATAAGAAGGAAAGCTACCAAGAGGAGTTA GAAGAGCGGATTATTTCCCTAATTGCATCATTACTTGGTGGAATTTTGAGAGGTACAAGAAGGGAAAGGGTGCTAAGTAAGTTTGTGGAGAATGAGTATG AGAAAATAGATAGACTTATGGAGCTGTATATCAGATACTCGAACAGAGTGAAGTCAGAGACTGAAAGAATGGATGAGCTTAATATGGATGATATGGAGAT GGACGATGACGAAAGATACAATAGAAAACTAGGATCTGGACTTTATACCCTCCAGTTGATAGCGATCATTCTGGGTCATCTCTGGTGTTCCGAGCACAAA AGCATGAGGGCGAGGATTGAGCTACTACTGAAGCAGTACAACCTCAGCAAGCAGGACGTTAAAGATGTTCTCCAGGAATATCACGACAACATCGGGGACC TGGACGGAGCGGAAGAGAAAGAGCGAGCACAAACGAGGATACTCAAGTTCATATCTGCTCTCTGA
AA sequence Show only first row Show all	>Lus10010958 pacid=23172450 polypeptide=Lus10010958 locus=Lus10010958.g ID=Lus10010958.BGIv1.0 annot-version=v1.0 MELPSSRSRNNPKRKREPPSPPRSRPPPNFYDDGDEAGGVVDTGNNGNDVDLSLLEAVEKSQNVVEALDNRTLKKLVLSFERRYKENIEARLKYPDQPDR FSDSEVELHLELEKLRVLAGGPELYPDLVGLGAIPSILGLLSHDNTDIAIDVVQLLQDLTDEDVLEDNDEPAKVLVDALVENNVLELLVQNMQRLSDTDP DEMAAVYTSLATIENLIEVKPAVAEMVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKKLGQMNGVDAVLQAVAMYKSKDPKSSDEEEM VENLFDCLCCLLMPLENKERFVMAEGVELMIIIMKQKKSAYSSAIRALDFAMTKYPPACERFVDVLGLKTAFAAFMDFHIFCLQIPMSKKNKKESYQEEL EERIISLIASLLGGILRGTRRERVLSKFVENEYEKIDRLMELYIRYSNRVKSETERMDELNMDDMEMDDDERYNRKLGSGLYTLQLIAIILGHLWCSEHK SMRARIELLLKQYNLSKQDVKDVLQEYHDNIGDLDGAEEKERAQTRILKFISAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02710			ARM repeat superfamily protein...		Lus10010958 [exp]	0	1
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10019438 [exp]	2.4	0.8973
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	4.1	0.8999
AT2G39670			Radical SAM superfamily protei...		Lus10000953 [exp]	4.9	0.8793
AT4G21060			Galactosyltransferase family p...		Lus10036154 [exp]	5.0	0.8519
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	7.1	0.8935
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10031586 [exp]	7.4	0.8807
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	9.2	0.8853
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	14.4	0.8635
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015561 [exp]	16.2	0.8527
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10022338 [exp]	18.2	0.8721

Compare expression of checked genes

Lus10010958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.