Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65910 379 / 1e-123 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G17260 305 / 4e-97 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G03200 294 / 6e-93 NAC ANAC045 NAC domain containing protein 45 (.1) AT3G17730 267 / 1e-85 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G54330 254 / 5e-80 NAC ANAC020 NAC domain containing protein 20 (.1) AT4G17980 221 / 1e-67 NAC ANAC071 NAC domain containing protein 71 (.1) AT5G46590 221 / 2e-67 NAC ANAC096 NAC domain containing protein 96 (.1) AT1G32510 209 / 8e-63 NAC ANAC011 NAC domain containing protein 11 (.1) AT3G10500 206 / 1e-58 NAC ANAC053 NAC domain containing protein 53 (.1) AT5G04410 206 / 1e-58 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007377 [exp] 580 / 0 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 569 / 0 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10042284 [exp] 272 / 1e-86 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 268 / 3e-85 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10035373 [exp] 231 / 3e-70 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1) Lus10030978 [exp] 230 / 5e-70 AT4G17980 273 / 6e-91 NAC domain containing protein 71 (.1) Lus10020165 [exp] 196 / 2e-56 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10017915 [exp] 192 / 5e-56 AT1G71930 314 / 4e-107 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10009669 [exp] 192 / 1e-55 AT3G18400 308 / 3e-104 NAC domain containing protein 58 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G081000 [exp] 451 / 4e-151 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.017G139500 [exp] 439 / 1e-146 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.008G081500 [exp] 271 / 7e-86 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.010G174600 [exp] 270 / 2e-85 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.015G030200 [exp] 255 / 4e-81 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.012G038100 [exp] 251 / 1e-78 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.003G089800 [exp] 229 / 3e-69 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.001G144400 [exp] 229 / 3e-69 AT4G17980 318 / 2e-108 NAC domain containing protein 71 (.1) Potri.012G056300 [exp] 202 / 8e-60 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1) Potri.015G046800 [exp] 202 / 8e-60 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10010959 pacid=23172520 polypeptide=Lus10010959 locus=Lus10010959.g ID=Lus10010959.BGIv1.0 annot-version=v1.0 ATGGCGCCGGTTTCGTTGCCGCCGGGGTTTCGGTTTCATCCGACGGACGAGGAGCTGGTGGCGTACTACCTGAAGAGGAAGATCAACGGGCAGAAGATAG AGTTGGAGATCATCCCTGAAGTTGATCTTTACAAGTGCGAGCCCTGGGATTTACCTGGAAAGTCTTTCCTCCCGAGCAAAGACATGGAGTGGTACTTCTT CAGCCCGCGAGACCGAAAATACCCCAACGGATCTCGAACCAACCGAGCAACAAGATCCGGGTACTGGAAAGCCACTGGTAAAGATCGCAAAGTCATGAAC TCCTCCCAGTCGTCCCAACCACACTCTAGCACTATCGTGGTCGGGACGAAGAAAACCCTAGTGTACTACCGCGGGCGCGCCCCACATGGGTCCCGCTCCA ACTGGGTCATGCACGAATACCGCCTCGACGACCGTCAATGCGACCACCCTGATTCGGGCTTGCAGGAGGCCTACGCGCTCTGTCGAATCTTTAAGAAAAT CGCCGGTCCCACTGCACCCAAGCTCAACGTTGAAGCCTACTATTTGTCGGGTTCCAATCATCGGAATAATGAACGTTGCTCTTCTAACAGCGTGGAGCGG TGTTCTGATGGTGGTGGTAATGCCTACGTGGACACTTGCTTTGTGGACAATAATAATGTCCACGTGGATGGCGGTGGGTGGCCGGATTTTACGCCTGGAA CGTCCTCGTTTATAGATCCTTATAGTTTCAGCTTCCAAAGTAGTAGTACGGCGGCGAGTCCATTTCCTAGTTGCTCCGGCCTTCCTAATTACCCTCCTTC CAAGGTAGATATAGCGTTGGAATGCGCGAGGTTGCAGCACAGATTCACTATGCCTCCACTAGAAGTGAATTATAATCATCATGATCAGCAACAACAAGGT TCGGATCTTCTGCAGGAGATTCTATCAGTAGCTCACGCGTCTCAGCAGCTTATAAACAACAACAACAACAACAACAAGCAACATCAATACAGTTTCCAAG CTGGACTGTTCGGAAGTGGTGGTTGCGGAGACGATTTCGCTGCTGATGTTAGCGACTTCACATTCACATCGTCGGCGAATAGGGAAATGTCGATCGGGTC CTCCAATGACCGGTCTTCGCCGTGGTTGGATCATCATCCGAGTAGTTCCAGGTCTGTAGAGATTGGCGGTGATGTGGATATTGGTGGTGGAGATCATAGA ATGGTGGAGAATTTGAGGTGGCTTGGCATGTCTAATGACGAGCTAATTAACAAGAGTTTCATGGAAGAGCACAAGATTGTACCAATGTCCAGCATCTCAA CCTCGGCAACACATAACCAGAATGATATTGGCTTCATTAGCCACGAGAGAAACGACGACGGTTACGGATCTCTGGGGTTCACCGACGACGACCATCCTTC CACCGTCAACGCCGACAATGTAGTAGCAAGCTCGCCAAGCTTTGATGACGTGGCGGCTGCGGAAGAGGAAGATCAAAAAGTCAAAGTCAACCACGGCCTC CTCGTCGCAACTCGCCAGGCGGCCAACACTTTCTTCCACCAGCTAGTCCCTTCCCAAACGGTCCAAATCCAGCTCAACAGTTGTAATTACTTCAATGCCA TTGACGTTGTGAGTCTGTTCGTGATGGTTCTCTTGCTGCAAGGCAAGAAGCTGCAGATTGTGGCGGCGAAGGACTCGTCGTCGTCGGAGATTAGCATTCG ACGGAGGCGGCGGCGTAAGGTGTCGACGGTGGGAGTGGTGTTGAAGAAGTTTGGGATATTTGTGACGGTTTCTTTGGCGGTGTGTACCATGCTGGTCAAC CGTGTCATGGTTACCACTTGA
AA sequence Show only first row Show all	>Lus10010959 pacid=23172520 polypeptide=Lus10010959 locus=Lus10010959.g ID=Lus10010959.BGIv1.0 annot-version=v1.0 MAPVSLPPGFRFHPTDEELVAYYLKRKINGQKIELEIIPEVDLYKCEPWDLPGKSFLPSKDMEWYFFSPRDRKYPNGSRTNRATRSGYWKATGKDRKVMN SSQSSQPHSSTIVVGTKKTLVYYRGRAPHGSRSNWVMHEYRLDDRQCDHPDSGLQEAYALCRIFKKIAGPTAPKLNVEAYYLSGSNHRNNERCSSNSVER CSDGGGNAYVDTCFVDNNNVHVDGGGWPDFTPGTSSFIDPYSFSFQSSSTAASPFPSCSGLPNYPPSKVDIALECARLQHRFTMPPLEVNYNHHDQQQQG SDLLQEILSVAHASQQLINNNNNNNKQHQYSFQAGLFGSGGCGDDFAADVSDFTFTSSANREMSIGSSNDRSSPWLDHHPSSSRSVEIGGDVDIGGGDHR MVENLRWLGMSNDELINKSFMEEHKIVPMSSISTSATHNQNDIGFISHERNDDGYGSLGFTDDDHPSTVNADNVVASSPSFDDVAAAEEEDQKVKVNHGL LVATRQAANTFFHQLVPSQTVQIQLNSCNYFNAIDVVSLFVMVLLLQGKKLQIVAAKDSSSSEISIRRRRRRKVSTVGVVLKKFGIFVTVSLAVCTMLVN RVMVTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010959 [exp]	0	1
AT1G05170			Galactosyltransferase family p...		Lus10001148 [exp]	1.4	0.8716
AT1G27180			disease resistance protein (TI...		Lus10008519 [exp]	2.0	0.8639
AT5G61280			Remorin family protein (.1)		Lus10034714 [exp]	2.4	0.8688
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003117 [exp]	4.5	0.8603
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	4.5	0.8713
AT1G05170			Galactosyltransferase family p...		Lus10002079 [exp]	5.5	0.8592
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10022739 [exp]	7.9	0.8349
AT4G12010			Disease resistance protein (TI...		Lus10042753 [exp]	12.7	0.8240
AT1G61550			S-locus lectin protein kinase ...		Lus10037730 [exp]	14.0	0.8065
AT4G37640		ACA2	calcium ATPase 2 (.1)		Lus10019300 [exp]	16.0	0.7957

Compare expression of checked genes

Lus10010959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.