Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40380 361 / 1e-116 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G70530 342 / 1e-109 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT1G70520 338 / 6e-108 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G19090 288 / 1e-89 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT1G16670 279 / 2e-88 Protein kinase superfamily protein (.1) AT1G56120 290 / 1e-86 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 290 / 2e-86 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 285 / 6e-85 Leucine-rich repeat transmembrane protein kinase (.1) AT4G23200 271 / 2e-82 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G23230 266 / 5e-82 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013040 [exp] 352 / 4e-113 AT1G70530 788 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10029122 [exp] 350 / 2e-112 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10030901 [exp] 344 / 1e-110 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10029123 [exp] 334 / 2e-106 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10009703 [exp] 333 / 6e-106 AT1G70520 319 / 4e-100 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030589 [exp] 332 / 2e-105 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10010927 [exp] 301 / 2e-95 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031401 [exp] 300 / 7e-95 AT1G56140 337 / 4e-105 Leucine-rich repeat transmembrane protein kinase (.1) Lus10020688 [exp] 293 / 1e-93 AT1G56140 323 / 1e-101 Leucine-rich repeat transmembrane protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G141400 [exp] 776 / 0 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141300 [exp] 771 / 0 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G276600 [exp] 653 / 0 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043900 [exp] 362 / 3e-117 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.010G043800 [exp] 339 / 2e-108 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043700 [exp] 337 / 2e-107 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.007G056000 [exp] 335 / 8e-107 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.012G087000 [exp] 322 / 1e-101 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G348000 [exp] 320 / 5e-101 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.011G027600 [exp] 312 / 3e-99 AT4G23280 461 / 3e-156 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10010960 pacid=23172477 polypeptide=Lus10010960 locus=Lus10010960.g ID=Lus10010960.BGIv1.0 annot-version=v1.0 ATGCTGAATGAAGGATGCAGCGTGTACAACGTGACCAACCCGGCCATTTTCAACTCCAACCTCAACGCCAGCTTCGGTGCCATCAGGTCACGCGCCGCGG CAGGGGAGAAATTCGTGACGGCGGAGCAGCTGAGTGGGGCCGACCCTGTCTACATCATGCTTCAGTGTAGGGACTACATGTCGGCGGCGGACTGCTCCGC CTGCTTCCGGAAGGCCTCGTCGCAGATACGGAACTGCTCCCGCAGCGCTAACGGCGCCCGCGTCGTCTTCGATGGCTGCTTCTTACGGTACGAACGGATA AATTTCTACGGCGAGACAACTCGGGACGCCAACCGCGAGTTCTGCACCAACCATACAACCTCCTCGCCGGAGGCCGCTTTTAATTCCACCGTACAAGGCC TGCTCACCGACCTCCAAATCGCCGCTCCCAAGACGCCGGAACTCTACGCCGCCGGCAAAAGGGAAGTGTCGGGGAATTCGAGCGTCTACGCCATCGCTCA GTGTGTCAGGACGATCGACCAGGCGGGCTGCATTGAATGCTTGGCGGTGGCCGTCCGCAACATCCAGCGATGTACGCCGAACGGTGACGGGAGGGCGGTG GATTCCGGCTGCTTTATGAGGTACTCTGATTCGCCGTTCTTCGCCGATAATCAGACCACCAATCTGGAACCCCTTTTGAGGACAGCCGACATCCTCGGAG CCACCGAGCTACGAGGCGCGACGATCTACAGCTACAAGGACTTAAAATCAGCAACCCGAAACTTCAACGATGAAAACAAGCTCGGAGAAGGAGGGTTCGG GGACGTATACAGAGGAACTTTAAAAAACGGCAAAATAGTAGCCGTTAAAAAACTCATAATCGGGTGCAACCCGCGGGCCAGAACCGATTTCGAAAGCGAG GTGACTCTGATCAGCAATGTACACCACCGGAACCTGATTCGGTTACTCGGTTGCTGCACCAAAGGGGTGGACCAGCTTCTTTTGGTGTACGAGTACATGC CTAACTCGAGTCTTGACCGGTTCTTGTTCCCCAATCCGAGTGGGGAGCGGAGTAACCCGGTTTTGGGTTGGAAGGAGCGGTTCGATGTGATTTTGGGGAC GGCTCAGGGGTTGGCGTATCTTCATGAGCAGTTCCATGTGTGTATTATACATAGGGATATTAAACCGAGTAATATTCTGCTCGACGATGAGTTTCAGCCG AAGATTGCGGATTTTGGGTTGGCTCGGTTGCTGCCCGATAACCAGAGTCATCTCACCACCAAGTTTGCGGGCACACTGGGATACACGGCGCCGGAATATG CGATACATGGACAGTTGTCGGAGAAGGTGGATACATATAGTTACGGGATAGTCGTGCTAGAGATCATAAGCGGTACTAAGAATAGTGGCATGGTCATCAA TTCTAACGGAGAATTCCTTCTTAAACGAGCGTGGAATCTGTACGAGAGAGGGAGTCACATAGAGCTGGTGGACGAAGCAATAGACCCGACCGAATACAAA GAAGAGGAGATGAAGAAAATAATAGAGATAGCGTTGACTTGCACCCAGTCAGCGCCCGCATTGCGGCCCACGATGTCGGAGATAATCGTGCTTCTCAAAA GCCTCAAGAACAACAGCTCAACCGAGCTGGGGAGGCCGGGATCAAGGCCAGCCTTCATCGAGAACATTGCCGATTTCCGGCCGAAGGTTAATAACAACTC TACTTCTAGCGCTTCCTCTGCATCCAACGCCAGTGCTTCCATCACTCAATTGTCTGGTCGATGA
AA sequence Show only first row Show all	>Lus10010960 pacid=23172477 polypeptide=Lus10010960 locus=Lus10010960.g ID=Lus10010960.BGIv1.0 annot-version=v1.0 MLNEGCSVYNVTNPAIFNSNLNASFGAIRSRAAAGEKFVTAEQLSGADPVYIMLQCRDYMSAADCSACFRKASSQIRNCSRSANGARVVFDGCFLRYERI NFYGETTRDANREFCTNHTTSSPEAAFNSTVQGLLTDLQIAAPKTPELYAAGKREVSGNSSVYAIAQCVRTIDQAGCIECLAVAVRNIQRCTPNGDGRAV DSGCFMRYSDSPFFADNQTTNLEPLLRTADILGATELRGATIYSYKDLKSATRNFNDENKLGEGGFGDVYRGTLKNGKIVAVKKLIIGCNPRARTDFESE VTLISNVHHRNLIRLLGCCTKGVDQLLLVYEYMPNSSLDRFLFPNPSGERSNPVLGWKERFDVILGTAQGLAYLHEQFHVCIIHRDIKPSNILLDDEFQP KIADFGLARLLPDNQSHLTTKFAGTLGYTAPEYAIHGQLSEKVDTYSYGIVVLEIISGTKNSGMVINSNGEFLLKRAWNLYERGSHIELVDEAIDPTEYK EEEMKKIIEIALTCTQSAPALRPTMSEIIVLLKSLKNNSSTELGRPGSRPAFIENIADFRPKVNNNSTSSASSASNASASITQLSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10010960 [exp]	0	1
AT2G41200			unknown protein		Lus10008568 [exp]	1.7	0.9146
AT4G27220			NB-ARC domain-containing disea...		Lus10008516 [exp]	1.7	0.9073
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10025128 [exp]	2.6	0.8821
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10036130 [exp]	3.7	0.9130
AT5G65550			UDP-Glycosyltransferase superf...		Lus10008956 [exp]	5.5	0.8864
					Lus10024718 [exp]	6.1	0.8253
AT1G70250			receptor serine/threonine kina...		Lus10008361 [exp]	6.8	0.8377
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10035841 [exp]	7.7	0.8890
AT3G13130			unknown protein		Lus10006387 [exp]	8.1	0.8650
AT5G01750			Protein of unknown function (D...		Lus10009092 [exp]	8.5	0.8692

Compare expression of checked genes

Lus10010960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.