Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65720 67 / 2e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031363 [exp] 300 / 4e-104 AT1G65720 112 / 5e-31 unknown protein Lus10020795 [exp] 183 / 3e-58 AT1G65720 105 / 3e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G142100 [exp] 76 / 1e-16 AT1G65720 88 / 5e-22 unknown protein Potri.004G078500 [exp] 72 / 2e-15 AT1G65720 86 / 3e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010961 pacid=23172475 polypeptide=Lus10010961 locus=Lus10010961.g ID=Lus10010961.BGIv1.0 annot-version=v1.0 ATGGCGTCGACTTCGGGGCATCTCGCCGGCAGCATCCTCCTCTCAATCGCCGTCACGATCGGATTCCTCTCCGTCGCCGTCTCCGCTGGAAGGCCCTGCA AGACTCTCTACATCTCCTCCTACTCAGTCTCCGTCAGGCCGATTCACTCCTTCCGCTACCCCAATCCTAGCCTCGGACGCCGCTCCGCTGGATTCGTCGC GATCTTCACCGAAATCGGCCACGCCAGCTCCTCATCCGACATGATCAGTGATCGGGCAGTCTTCCCTGGCGTCGAATCGGACTCTAGCCACGTCTCGGTA CGGCCGCGGTTCGTCCACCGGTTTGACCGCGATCAAAATAACCACCACCATAACCAGCAGCAGGATTACGCTAGCCTTCTTCCTTTCGGCCTTTCATCCC ACTCGATCAGCTCGCTTAGAGACCGTACCAAGGACATCCTCAGCGTGGTTGTTCTGAGTGTGTGTGTGGCCTCTCTCTGCGGGTGGGTGTGTGGACCCCC CCCCGCCGCCACGATGTACCTCGTCTGGGCGCTCTTCGCCGCACGATCTGCCGCCTACTACGACGAATTTTCCGACGATGAGGACGAAGAAGATGATGTT GTCTCCGCTAAGAAGATGGGATATGCACAAATTCCTGAAGCTGAGAAAGTGGCGGCAATTACCACCCCTGCTAAATCTGTGGTATGA
AA sequence Show only first row Show all	>Lus10010961 pacid=23172475 polypeptide=Lus10010961 locus=Lus10010961.g ID=Lus10010961.BGIv1.0 annot-version=v1.0 MASTSGHLAGSILLSIAVTIGFLSVAVSAGRPCKTLYISSYSVSVRPIHSFRYPNPSLGRRSAGFVAIFTEIGHASSSSDMISDRAVFPGVESDSSHVSV RPRFVHRFDRDQNNHHHNQQQDYASLLPFGLSSHSISSLRDRTKDILSVVVLSVCVASLCGWVCGPPPAATMYLVWALFAARSAAYYDEFSDDEDEEDDV VSAKKMGYAQIPEAEKVAAITTPAKSVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65720			unknown protein		Lus10010961 [exp]	0	1
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	1.4	0.9297
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10027290 [exp]	1.4	0.9300
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10041819 [exp]	2.2	0.9190
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10033702 [exp]	3.0	0.9254
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037681 [exp]	5.5	0.9067
AT1G65720			unknown protein		Lus10031363 [exp]	7.0	0.9177
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	7.3	0.9177
AT5G67020			unknown protein		Lus10019344 [exp]	8.2	0.9236
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10014132 [exp]	8.5	0.9076
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10033934 [exp]	8.7	0.8933

Compare expression of checked genes

Lus10010961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.