Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02700 235 / 5e-78 NC domain-containing protein-related (.1) AT5G06370 201 / 2e-64 NC domain-containing protein-related (.1) AT4G00905 175 / 5e-54 NC domain-containing protein-related (.1) AT1G01225 167 / 4e-51 NC domain-containing protein-related (.1) AT5G16360 167 / 5e-51 NC domain-containing protein-related (.1) AT5G16330 156 / 4e-47 NC domain-containing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029402 [exp] 211 / 3e-68 AT5G06370 410 / 3e-146 NC domain-containing protein-related (.1) Lus10030231 [exp] 164 / 6e-50 AT1G01225 360 / 1e-126 NC domain-containing protein-related (.1) Lus10005981 [exp] 162 / 6e-49 AT1G01225 360 / 8e-127 NC domain-containing protein-related (.1) Lus10004198 [exp] 114 / 3e-31 AT5G06370 210 / 1e-68 NC domain-containing protein-related (.1) Lus10031362 [exp] 71 / 1e-15 AT3G02700 69 / 6e-18 NC domain-containing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G078700 [exp] 284 / 4e-97 AT3G02700 343 / 3e-120 NC domain-containing protein-related (.1) Potri.017G142300 [exp] 275 / 1e-93 AT3G02700 328 / 2e-114 NC domain-containing protein-related (.1) Potri.006G203300 [exp] 203 / 4e-65 AT5G06370 396 / 4e-141 NC domain-containing protein-related (.1) Potri.014G101300 [exp] 184 / 2e-57 AT1G01225 352 / 2e-123 NC domain-containing protein-related (.1) Potri.002G174700 [exp] 177 / 4e-55 AT1G01225 333 / 7e-116 NC domain-containing protein-related (.1) Potri.013G043100 [exp] 63 / 7e-12 AT5G06370 87 / 1e-20 NC domain-containing protein-related (.1) Potri.005G056300 [exp] 41 / 9e-05 AT5G16330 49 / 1e-07 NC domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF04970 [flax] [poplar] LRAT Lecithin retinol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10010962 pacid=23172512 polypeptide=Lus10010962 locus=Lus10010962.g ID=Lus10010962.BGIv1.0 annot-version=v1.0 ATGTCCAATGCAATATCTATTAACCTCCATTCTGACACTGCACCAGGTATCTATGCTGGGGACGGGACTGTAATCCATTTCACTCGCGGAGCAGGCCAAG AAATCGGCACTGGAACTTTCCTAGACAACTACATTCTCAGCTCATCCCCAACTCGTCCCACCGATGATCCATGTCCCGATTGCGGTGACCAACCAAAGCT CGATGGCGTCCTCCGCTCCTGTCTCCACTGCTTCCTCTGGGGCGGGGACCTCTACCGTTTCGAATACAACGTCTCGTCAGCCTTCTTCTTAGCAAAAGCC AGAGGAGGAACCTGCACTCTCGCCCCATCCGACCCTCCTGAAGAAGTCCTCCACAGGGCTTCCTTCCTCCTCGAGAATGGTTTCGGGAACTACAGCCTTA TCAGGAACAACTGCGAGGATTTCGCAATCTACTGCAAGACCGGGATGCTCGTGTTCACGAGCATCAGCGTGGGGAGGAGCGGACAAGCTGCATCTTTTGT GGCTGCCGCGAGTTCTGTAGTGTCCTCGCCGCTTCGATTCTTGACTACTAGCTTTAGCGGGCTGGCTGTCGTGGGGTTCGGGATGTATTGTGTCAGCCGG TATGTATCGGATATGGGGGTAAGGCGTGATGTTAAGAAGGTCCCCGTTGAGGTGCTCATTTCTGGCTGCGGTTCAGTAGCATCTTCTTCGAATAAGGCGG AAGTTGCAACTGCCAAAGAGAAGTTGGCATGA
AA sequence Show only first row Show all	>Lus10010962 pacid=23172512 polypeptide=Lus10010962 locus=Lus10010962.g ID=Lus10010962.BGIv1.0 annot-version=v1.0 MSNAISINLHSDTAPGIYAGDGTVIHFTRGAGQEIGTGTFLDNYILSSSPTRPTDDPCPDCGDQPKLDGVLRSCLHCFLWGGDLYRFEYNVSSAFFLAKA RGGTCTLAPSDPPEEVLHRASFLLENGFGNYSLIRNNCEDFAIYCKTGMLVFTSISVGRSGQAASFVAAASSVVSSPLRFLTTSFSGLAVVGFGMYCVSR YVSDMGVRRDVKKVPVEVLISGCGSVASSSNKAEVATAKEKLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02700			NC domain-containing protein-r...		Lus10010962 [exp]	0	1
AT4G33640			unknown protein		Lus10007087 [exp]	1.0	0.9422
AT5G53750			CBS domain-containing protein ...		Lus10042702 [exp]	1.7	0.9256
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021827 [exp]	2.0	0.9197
AT1G21830			unknown protein		Lus10018177 [exp]	2.4	0.9268
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10018250 [exp]	6.0	0.9042
AT1G79420			Protein of unknown function (D...		Lus10001755 [exp]	6.5	0.9149
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10034652 [exp]	7.7	0.9161
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10032290 [exp]	8.0	0.8970
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031780 [exp]	12.5	0.9027
AT5G03110			unknown protein		Lus10019920 [exp]	12.5	0.9013

Compare expression of checked genes

Lus10010962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.