Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37370 400 / 2e-138 ATSRL1 PRP38 family protein (.1.2.3.4) AT2G40650 50 / 1e-06 PRP38 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031361 [exp] 443 / 1e-155 AT5G37370 394 / 2e-136 PRP38 family protein (.1.2.3.4) Lus10015203 [exp] 48 / 8e-06 AT5G37370 52 / 3e-07 PRP38 family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144121 [exp] 456 / 5e-160 AT5G37370 408 / 7e-141 PRP38 family protein (.1.2.3.4) Potri.004G075700 [exp] 449 / 4e-157 AT5G37370 411 / 4e-142 PRP38 family protein (.1.2.3.4) Potri.013G012000 [exp] 56 / 1e-08 AT2G40650 346 / 7e-118 PRP38 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03371 [flax] [poplar] PRP38 PRP38 family
Representative CDS sequence Show only first row Show all	>Lus10010963 pacid=23172521 polypeptide=Lus10010963 locus=Lus10010963.g ID=Lus10010963.BGIv1.0 annot-version=v1.0 ATGGAAGTAAAAACGAGCGGGAAGCCGATCGATACTATGCTGGAGAAGGTCCTCTGTATGAACATCCTGTCCTCCGATTACTTCAAGGAGCTTTACAGGT TAAAGACTTACCATGAAGTGGTTGACGAAATCTACAATCAAGTTGACCATGTCGAGCCATGGATGACTGGGAACTGTCGTGGCCCGTCGACTGCCTTTTG TCTCCTGTACAAGTTTTTCACCATGAAGCTCACTGTTAAACAGATGCATGGCCTGCTGAAGCACGAAGATTCGCCTTACATTCGAGCGATTGGATTCCTC TACTTGAGATATGCCGGTGATCCCAAGGCACTATGGAGCTGGTATGAACCATATATTAAAGATGACGAGGAATTTTCTCCTGGATCCAGTGGCCGGAAAA CTACCATGGGTGTTTATGTTCGTGATCTTCTCCTCGGACAGTACTATTTCGATACCCTGTTACCCCGAATTCCTGTCCTGGTACTGCGTCAGGCCGCTTC CAGTCTTGAAAAGATGAATCTACCCACAAAGTCATCCGGTTCAACCGGCGATAATAACCGCCATGGTTCTGACGAGACAGCTCGTCGGCCGCCTTCCGTG AAGGCTGCACTTTCAGTGTCCTTCGGTCAGCGGGCTCCTCACCGTGCCTCGACTAGGGACTCATCGCCTGTCCGTCGAACGATACCGACACCTGCTTACG ATAGAAATGCCGATGATAAGCGGAGATCTCCCAGCAGCCGTCGCAGCCAGAGTCGTGAACGAGATTATTCCGACCGGGACAGAGGCCGGGACAGAGACCG AGAGAGGGAGAGGGATAGAGAAAGGGACAGAAGGTATGATTATGAGAGGAGGACAGGCTACGGTGACCGAGAAAGCAGAAGGGACCACGAAAGGGGCAGA AGGGATTACAACGACAGCAGGCATCACAGGGATCGTCGCAGTCGGAGCAGGAGCCGTAGCCGCAGCAGGAGCAGTGCACCGTTTGATCGCCATCCCACAC CGCAACGGGATGGAGACAAGGCGAAGCAGCTGTCCACATCGAGCCAGCTTGCGAAACTAAAGGATTTGTATGGTGATTTGAGTGAGAAAAAAGGTGAAGG TGCTGGGATGGAAAGGGGTGGTCATATTCGAGATAGCAGCGGAGAGGAGGTGATCAGGCTGGGTGGTGGTTCGGGGTGGAAGTAA
AA sequence Show only first row Show all	>Lus10010963 pacid=23172521 polypeptide=Lus10010963 locus=Lus10010963.g ID=Lus10010963.BGIv1.0 annot-version=v1.0 MEVKTSGKPIDTMLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFL YLRYAGDPKALWSWYEPYIKDDEEFSPGSSGRKTTMGVYVRDLLLGQYYFDTLLPRIPVLVLRQAASSLEKMNLPTKSSGSTGDNNRHGSDETARRPPSV KAALSVSFGQRAPHRASTRDSSPVRRTIPTPAYDRNADDKRRSPSSRRSQSRERDYSDRDRGRDRDRERERDRERDRRYDYERRTGYGDRESRRDHERGR RDYNDSRHHRDRRSRSRSRSRSRSSAPFDRHPTPQRDGDKAKQLSTSSQLAKLKDLYGDLSEKKGEGAGMERGGHIRDSSGEEVIRLGGGSGWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10010963 [exp]	0	1
AT3G12620			Protein phosphatase 2C family ...		Lus10030302 [exp]	4.0	0.8400
AT3G19080			SWIB complex BAF60b domain-con...		Lus10019640 [exp]	6.7	0.8099
AT5G17380			Thiamine pyrophosphate depende...		Lus10028503 [exp]	12.3	0.7791
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014994 [exp]	13.3	0.8315
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10023392 [exp]	14.4	0.8276
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10030532 [exp]	16.9	0.7754
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10030140 [exp]	22.0	0.7457
AT5G26990			Drought-responsive family prot...		Lus10015214 [exp]	22.4	0.8031
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Lus10027797 [exp]	23.1	0.7896
AT1G34320			Protein of unknown function (D...		Lus10006049 [exp]	24.7	0.7361

Compare expression of checked genes

Lus10010963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.