Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02720 635 / 0 Class I glutamine amidotransferase-like superfamily protein (.1) AT2G38860 308 / 3e-102 YLS5 Class I glutamine amidotransferase-like superfamily protein (.1.2.3) AT3G54600 301 / 1e-99 Class I glutamine amidotransferase-like superfamily protein (.1) AT1G53280 63 / 1e-10 AtDJ1B DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031360 [exp] 762 / 0 AT3G02720 624 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10014721 [exp] 349 / 5e-118 AT2G38860 490 / 2e-173 Class I glutamine amidotransferase-like superfamily protein (.1.2.3) Lus10003084 [exp] 119 / 4e-29 AT2G38840 650 / 0.0 Guanylate-binding family protein (.1) Lus10003083 [exp] 131 / 5e-29 ND 173 / 2e-52 Lus10009525 [exp] 58 / 5e-09 AT1G53280 562 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) Lus10020345 [exp] 55 / 5e-08 AT1G53280 564 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G143880 [exp] 665 / 0 AT3G02720 650 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G076200 [exp] 621 / 0 AT3G02720 603 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G076000 [exp] 620 / 0 AT3G02720 608 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.017G143940 [exp] 612 / 0 AT3G02720 609 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G075900 [exp] 573 / 0 AT3G02720 562 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.011G111900 [exp] 59 / 3e-09 AT1G53280 581 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF01965 [flax] [poplar] DJ-1_PfpI DJ-1/PfpI family
Representative CDS sequence Show only first row Show all	>Lus10010964 pacid=23172502 polypeptide=Lus10010964 locus=Lus10010964.g ID=Lus10010964.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCAAAGACCCACCCAACGGTTCTACTACTATGCGGCGATTACATGGAAGATTCCGAGGCCATGGTCCCTTTTCAAGCTCTGATCGCCTTCG GAATCGCAGTTCACGCCGCTTGTCCGGGCAAGAAGTCCGGCGAGTTTTGCCCCACTGCCGTCCATCAGCCCGGTGGTCATCAGACTTATAGCGAATCCCG AGGTCATAATTTCACTCTTAACGCCACATTTGAGGAAATCGATTGTGCGAAGTACGATGGTCTCGTCATACCTGGTGGACGAGCTCCGGAATATCTAGCG ATGGATGAAACTGTGTTGAACTACGTGAAGAAATTCTCCGAGTCTGGAAAGCCGATTGCCTCTATATGCCATGGACAGTTAATTCTCGCAGCTGCAGACA TAGTTAGGGGTCGAAAGTGTACTGCGTTTCCTTCTCTGAAGCCTGCGTTGATTGCCGCTGGTGCAAACTGGGTTGAGCCTCAGACCATGGCAGCTTGCGT TGTCGATGGAAATCTTGTTACAGGGGCAACTTATGAAGGCCATCCCGAGTTTATCAGCCATTTTGTGAAAGCACTGGGAGGTACAATCACCGGGTTCGAT AAAAAGATCCTGTTTCTGTGTGGGGATTTCATGGAAGATTATGAGGTGATGGTTCCATTCCAATCCCTCCAAGCACTCGGGTGCCACGTTGACGGAGTTT GTCCTAAGAAGAAAGCTGGGGAGAAATGTGCTACGGCCATCCACGATTTCGAAGGAGACCAGACTTACAGCGAGAAGCCTGGCCATGATTTCACACTAAC CGCTTCGTATGATGCTACTGATGCACCTAGCTATGATGCTCTAGTCATCCCCGGTGGTCGAGCTCCAGAGTATTTGGCGCTCGACGAGACTGTGATCGAT TTGGTGAAGAAGTTCATGGAATCTAAGAAACCGGTCGCATCTATCTGCCATGGACAGCAGATCTTGGCCGCTGCAGGTGTTTTGAAGGGAAGAAAATGCA CGGCGTACCCGGCGGTGAAGCTGAATGTGGTATTGGCAGGAGGTGAGTGGCTTGAACCTGATCCGATTGACCGATGCTATACCGATGGTAATTTGGTTAC TGGAGCTGCTTGGCCGGCTCACCCGGAATTTGTCTCGCAGTTGATGGCATTGCTCGGTGTTCGGGTCTCGTTCTAG
AA sequence Show only first row Show all	>Lus10010964 pacid=23172502 polypeptide=Lus10010964 locus=Lus10010964.g ID=Lus10010964.BGIv1.0 annot-version=v1.0 MASPKTHPTVLLLCGDYMEDSEAMVPFQALIAFGIAVHAACPGKKSGEFCPTAVHQPGGHQTYSESRGHNFTLNATFEEIDCAKYDGLVIPGGRAPEYLA MDETVLNYVKKFSESGKPIASICHGQLILAAADIVRGRKCTAFPSLKPALIAAGANWVEPQTMAACVVDGNLVTGATYEGHPEFISHFVKALGGTITGFD KKILFLCGDFMEDYEVMVPFQSLQALGCHVDGVCPKKKAGEKCATAIHDFEGDQTYSEKPGHDFTLTASYDATDAPSYDALVIPGGRAPEYLALDETVID LVKKFMESKKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLAGGEWLEPDPIDRCYTDGNLVTGAAWPAHPEFVSQLMALLGVRVSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02720			Class I glutamine amidotransfe...		Lus10010964 [exp]	0	1
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030605 [exp]	2.4	0.8800
AT2G42005			Transmembrane amino acid trans...		Lus10022995 [exp]	4.0	0.8716
					Lus10017792 [exp]	6.7	0.8655
AT3G26020			Protein phosphatase 2A regulat...		Lus10031536 [exp]	8.9	0.7614
AT1G32410			Vacuolar protein sorting 55 (V...		Lus10006605 [exp]	9.5	0.8574
AT5G17190			unknown protein		Lus10005110 [exp]	10.0	0.8585
AT5G19080			RING/U-box superfamily protein...		Lus10034030 [exp]	11.5	0.7908
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10019967 [exp]	12.0	0.8138
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10021801 [exp]	12.6	0.8127
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Lus10024871 [exp]	13.3	0.7812

Compare expression of checked genes

Lus10010964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.