Plant FIBer expression Database

Lus10010967 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G66080 318 / 3e-112 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031356
[exp]
379 / 1e-136 AT1G66080 325 / 4e-115 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G082100
[exp]
347 / 1e-123 AT1G66080 318 / 1e-112 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05603 DUF775 Protein of unknown function (DUF775)
Representative CDS sequence
>Lus10010967 pacid=23172445 polypeptide=Lus10010967 locus=Lus10010967.g ID=Lus10010967.BGIv1.0 annot-version=v1.0
ATGTTTGGAGTCGTGTTCCCCAATCGAAGCTTCCCGCTCGACATCGCCGCCTTCTCCCAAATCGACCCCTTCCACTGGATCCTCGACATGAACACCTTCG
TCGGCGAGGCATACGACGACATCCGCGAGGTATGCATCTTCCTCCTAAACAACTTCACTTTACCGTCGGACAAAGCCCTGGCCGTCTACGTCCAATCCCC
GGGGTCATCATTCCAGTACTGTGGCGCCGTCACGATTGCCCGTCCTTCAGCAGTTCTCTCCCTGAATTGGCCCGATCCCGGAGGCCAGCTTCAGCTCACA
GCTCCTGACGCCGCGCCACTCACCGCCAAAATCGGCGTGTCGGTAGAGGACTTGGCGTCGCTGCCGTCGCTTGACGTGGCGGCGGAGAAGAGAATCGAGA
GGCTGGCGATGAAAGTCGGGGAGAATCTGTTTAACTATATGCAGTCGTTCTGTGGCGTGGATGGGAGTAAGCTGATTGTCCCGATGGATATATTGGATCG
TTGGTTTAAGAAGTTTCAAGAGAGGGCCAAGCGTGATCCTCAGTATTTGAAGGGATTCGAATTGTAG
AA sequence
>Lus10010967 pacid=23172445 polypeptide=Lus10010967 locus=Lus10010967.g ID=Lus10010967.BGIv1.0 annot-version=v1.0
MFGVVFPNRSFPLDIAAFSQIDPFHWILDMNTFVGEAYDDIREVCIFLLNNFTLPSDKALAVYVQSPGSSFQYCGAVTIARPSAVLSLNWPDPGGQLQLT
APDAAPLTAKIGVSVEDLASLPSLDVAAEKRIERLAMKVGENLFNYMQSFCGVDGSKLIVPMDILDRWFKKFQERAKRDPQYLKGFEL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G66080 unknown protein Lus10010967
[exp]
0 1
AT3G61770 Acid phosphatase/vanadium-depe... Lus10030253
[exp]
1.7 0.9238
AT4G15248 CO B-box type zinc finger family ... Lus10015097
[exp]
1.7 0.9455
AT2G31670 Stress responsive alpha-beta b... Lus10017873
[exp]
2.8 0.9222
AT4G29680 Alkaline-phosphatase-like fami... Lus10032681
[exp]
3.2 0.9303
AT3G22590 PHP, CDC73 PLANT HOMOLOGOUS TO PARAFIBROM... Lus10041198
[exp]
5.5 0.8940
AT2G46800 ATMTP1, ZAT1, Z... ZINC TRANSPORTER OF ARABIDOPSI... Lus10030192
[exp]
5.5 0.9156
AT3G21890 CO B-box type zinc finger family ... Lus10031583
[exp]
7.0 0.9175
AT2G16600 ROC3 rotamase CYP 3 (.1.2) Lus10012167
[exp]
7.1 0.8789
AT2G25140 HSP98.7, CLPB-M... HEAT SHOCK PROTEIN 98.7, CASEI... Lus10041018
[exp]
7.7 0.9183
AT2G47180 ATGOLS1 galactinol synthase 1 (.1) Lus10031434
[exp]
7.9 0.9168

Lus10010967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.