Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30170 364 / 1e-126 Protein phosphatase 2C family protein (.1.2) AT5G66720 145 / 3e-40 Protein phosphatase 2C family protein (.1.2) AT4G16580 144 / 3e-39 Protein phosphatase 2C family protein (.1) AT4G33500 113 / 1e-27 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031355 [exp] 578 / 0 AT2G30170 352 / 3e-122 Protein phosphatase 2C family protein (.1.2) Lus10014413 [exp] 145 / 1e-40 AT4G16580 390 / 4e-134 Protein phosphatase 2C family protein (.1) Lus10023916 [exp] 146 / 2e-40 AT4G16580 384 / 1e-130 Protein phosphatase 2C family protein (.1) Lus10010797 [exp] 139 / 7e-38 AT4G16580 469 / 9e-165 Protein phosphatase 2C family protein (.1) Lus10016309 [exp] 138 / 1e-36 AT4G16580 542 / 0.0 Protein phosphatase 2C family protein (.1) Lus10001655 [exp] 107 / 8e-28 AT5G66720 127 / 6e-35 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G282500 [exp] 424 / 5e-150 AT2G30170 382 / 1e-133 Protein phosphatase 2C family protein (.1.2) Potri.001G381000 [exp] 142 / 5e-40 AT5G66720 197 / 4e-60 Protein phosphatase 2C family protein (.1.2) Potri.014G042800 [exp] 142 / 2e-38 AT4G16580 522 / 0.0 Protein phosphatase 2C family protein (.1) Potri.011G102200 [exp] 131 / 1e-36 AT4G16580 191 / 4e-58 Protein phosphatase 2C family protein (.1) Potri.005G125700 [exp] 128 / 7e-34 AT4G16580 373 / 3e-126 Protein phosphatase 2C family protein (.1) Potri.007G028900 [exp] 128 / 1e-33 AT5G66720 405 / 1e-139 Protein phosphatase 2C family protein (.1.2) Potri.011G013000 [exp] 122 / 8e-33 AT4G16580 175 / 6e-52 Protein phosphatase 2C family protein (.1) Potri.009G021300 [exp] 108 / 1e-26 AT4G16580 184 / 8e-54 Protein phosphatase 2C family protein (.1) Potri.001G089201 [exp] 70 / 3e-14 AT4G16580 156 / 8e-46 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF07228 [flax] [poplar] SpoIIE Stage II sporulation protein E (SpoIIE)
Representative CDS sequence Show only first row Show all	>Lus10010968 pacid=23172449 polypeptide=Lus10010968 locus=Lus10010968.g ID=Lus10010968.BGIv1.0 annot-version=v1.0 ATGGCGATTCCCGCTTTCAGAGCTTCGATCCCTCACCACTGCAATCCACAATTCCACAGCTCGCTTCCAAACACATGGATGAGATTCCGAACTTCAACTT CAACTCCGACGAAGAATCGGATTCTTCCTCTTCCTCTTGCTTCTTCATCGGATCTCAACACCCCCCGGTCAGAGGTTCAGTTCTGCGTTGGAACTCACCT GATTCCACACCCGAATAAGGTAGAGAAAGGAGGTGAAGATGCGTTTCTCATAAGCACCTACAATGGTGGAGTTTGTGCCATTGCTGATGGTGTCTCAGGT TGGGGGAAAAAGAATGTGGATCCTGCACTGTTCTCTCAAGAACTGATGGCAAATGCTTCGTGTTTCTTACAGGACGTGGAGGTTGATTGTGATCCTCAAG TTTTGATTAGGAAAGCACATGCTGCTACCTCCTCAATTGGCTCAGCTACTGTCGTTGTAGCTATGCTGGAGAGAAACGGAACACTAAAGGTTGCAAGTGT TGGAGATTGTGGACTAAAACTCATCCGTGGAGGGCGAATAATATTCTCCACTACGCCACAAGAACACTATTTCGACTGTCCATATCAATTGAGCTCCGAA ACTGTTGGCCAAACATATCTTGACGCTATGGTCAGCAATGTGGAAGTAATGGAGGGAGATTTTGTCGTGATGGGTTCCGACGGCCTCTTCGACAATGTTT TCGATCACGAGATCGTTTCCACCATAGCCAGCTATGAAAATGTTACTGATACTGCCAAAGCATTAGCCAACTTAGCCAAAGTTCATTCCGTTGATTCGAG CTACGAGTCGCCTTACGCACTGGAAGCTCGGTCCAAGGGTATTGAGGCTCCGTTGTGGAAAAGGATACTCGGGATGAAGCTTACAGGCAAGACACGTGGG AAGCTTGACGATATTACTGTGATAGTTGGCCAGGTTGTAAAAGCTCGTGATGGATGA
AA sequence Show only first row Show all	>Lus10010968 pacid=23172449 polypeptide=Lus10010968 locus=Lus10010968.g ID=Lus10010968.BGIv1.0 annot-version=v1.0 MAIPAFRASIPHHCNPQFHSSLPNTWMRFRTSTSTPTKNRILPLPLASSSDLNTPRSEVQFCVGTHLIPHPNKVEKGGEDAFLISTYNGGVCAIADGVSG WGKKNVDPALFSQELMANASCFLQDVEVDCDPQVLIRKAHAATSSIGSATVVVAMLERNGTLKVASVGDCGLKLIRGGRIIFSTTPQEHYFDCPYQLSSE TVGQTYLDAMVSNVEVMEGDFVVMGSDGLFDNVFDHEIVSTIASYENVTDTAKALANLAKVHSVDSSYESPYALEARSKGIEAPLWKRILGMKLTGKTRG KLDDITVIVGQVVKARDG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30170			Protein phosphatase 2C family ...		Lus10010968 [exp]	0	1
AT5G04490		VTE5	vitamin E pathway gene 5 (.1)		Lus10028835 [exp]	1.0	0.9051
AT1G49380			cytochrome c biogenesis protei...		Lus10040510 [exp]	6.2	0.8979
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013029 [exp]	7.5	0.8852
AT3G18500			DNAse I-like superfamily prote...		Lus10036357 [exp]	9.5	0.8486
AT1G74410			RING/U-box superfamily protein...		Lus10001654 [exp]	12.4	0.8932
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10014022 [exp]	13.5	0.8779
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10004200 [exp]	16.7	0.8831
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027576 [exp]	17.7	0.8726
AT5G57960			GTP-binding protein, HflX (.1)		Lus10024287 [exp]	18.5	0.8657
					Lus10018660 [exp]	18.8	0.8486

Compare expression of checked genes

Lus10010968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.