Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27700 128 / 9e-39 Ribosomal protein S21e (.1) AT3G53890 122 / 2e-36 Ribosomal protein S21e (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020645 [exp] 137 / 2e-42 AT5G27700 151 / 7e-50 Ribosomal protein S21e (.1) Lus10015173 [exp] 137 / 3e-42 AT5G27700 151 / 1e-49 Ribosomal protein S21e (.1) Lus10031494 [exp] 93 / 5e-25 AT5G27700 89 / 2e-25 Ribosomal protein S21e (.1) Lus10031352 [exp] 78 / 4e-17 AT3G25810 236 / 2e-73 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029895 [exp] 0 / 1 AT5G27700 85 / 2e-32 Ribosomal protein S21e (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017600 [exp] 133 / 7e-41 AT5G27700 153 / 2e-50 Ribosomal protein S21e (.1) Potri.005G026000 [exp] 133 / 7e-41 AT5G27700 153 / 2e-50 Ribosomal protein S21e (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01249 [flax] [poplar] Ribosomal_S21e Ribosomal protein S21e
Representative CDS sequence Show only first row Show all	>Lus10010971 pacid=23172480 polypeptide=Lus10010971 locus=Lus10010971.g ID=Lus10010971.BGIv1.0 annot-version=v1.0 ATGCAGAACGAAGAAGGCCAGAACGTGGATCTCTACGTTCCCAGGAAATGCTCTGTGACTAATAGGCTCATCACCTCAAAGGATCACGCCTCCTTCCAGA GCAATCTCGGCCATTTGGATGCCAACGGACGTTTCACCGGCCAATTCACCACTTTCGCTCTCTGTAGCTTCGGCCGTGCTCAGGGTGATGGAGGCAGTGC ACTTGATAGGCTGTGGCAGAAAGAAGAAGGCAGAGCTCTGTCAGTGATTGGTTCGCAGTGGAGATCGTGGTGTGCTTGCGACGGATTCCATACTCGTATG GTTCAGTTTCGTGGTTTTCCATTTAGACAGACGTTGCTCGAAAATATGAAAGCTTTCCTTATGAATAAGGAACTTGTTGCTGGCCTGTTTGTACCTGATG GAACAAATGATCAAGAAATCGAGCTGTACCAGTCCGATTGTGTGTTTAAAGTACCAGGTAGTGATTCAAAGATCAAAGCGGTTAGAAAAGCAACGACACG GCCATGTCCCTGTCGTTCGAAGTTGACAACCCCTCCGAGATTCCATGCTTATACATGTAGTGGCTCGCTCGAGCTACACCAACAGCAAGATCTACATAAG TAG
AA sequence Show only first row Show all	>Lus10010971 pacid=23172480 polypeptide=Lus10010971 locus=Lus10010971.g ID=Lus10010971.BGIv1.0 annot-version=v1.0 MQNEEGQNVDLYVPRKCSVTNRLITSKDHASFQSNLGHLDANGRFTGQFTTFALCSFGRAQGDGGSALDRLWQKEEGRALSVIGSQWRSWCACDGFHTRM VQFRGFPFRQTLLENMKAFLMNKELVAGLFVPDGTNDQEIELYQSDCVFKVPGSDSKIKAVRKATTRPCPCRSKLTTPPRFHAYTCSGSLELHQQQDLHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27700			Ribosomal protein S21e (.1)		Lus10010971 [exp]	0	1
AT3G49601			unknown protein		Lus10034691 [exp]	1.4	0.9310
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	3.2	0.8987
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	7.9	0.8925
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	9.2	0.8891
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	10.2	0.8891
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	11.2	0.8891
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	12.1	0.8868
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	13.0	0.8863
AT2G44760			Domain of unknown function (DU...		Lus10020744 [exp]	13.3	0.6994
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	13.7	0.8858

Compare expression of checked genes

Lus10010971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.