Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48480 585 / 0 RKL1 receptor-like kinase 1 (.1) AT3G02880 555 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 554 / 0 RLK902 receptor-like kinase 902 (.1) AT5G16590 550 / 0 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT2G26730 473 / 6e-160 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 463 / 4e-156 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 452 / 4e-152 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 433 / 2e-144 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G68400 383 / 1e-124 leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G23740 379 / 1e-123 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031350 [exp] 988 / 0 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10004040 [exp] 739 / 0 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10017996 [exp] 593 / 0 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10002299 [exp] 466 / 8e-162 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10035012 [exp] 476 / 5e-161 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 471 / 2e-159 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 469 / 1e-158 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 469 / 2e-158 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034446 [exp] 468 / 4e-158 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086100 [exp] 692 / 0 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 690 / 0 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 637 / 0 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.012G044600 [exp] 606 / 0 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.019G131500 [exp] 484 / 2e-164 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 483 / 2e-164 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 483 / 5e-164 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 468 / 3e-158 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 468 / 2e-157 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G136100 [exp] 432 / 1e-144 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010973 pacid=23172447 polypeptide=Lus10010973 locus=Lus10010973.g ID=Lus10010973.BGIv1.0 annot-version=v1.0 ATGATTCCCCGCCCTTTCTTCTTCCTTTTGGCGGCGGCGCTTTTGCTTCTGACGGCGGATTCAGATCTCGCAGCTGACAGAGCCGCCCTCGTGGCTCTAC GCGCCGCTGTAGGCGGCAGGTCTCTCCTATGGAACTTATCCGACTCCTCTCCCTGCAACTGGGTCGGTGTCAATTGCGCCGCAAACCGGGTGGTGGAGCT CCGACTACCCGGGATGGGTCTCTCCGGCGAGCTCCCTATCGGTCTCGGAAACTTAACTCAGCTCATCGCTCTCTCTCTCCGCTTCAACGCGCTCAGAGGG AGTGTTCCTGATGACGTGTCGAATCTCGCCTCCTTAAAGAATCTCTATTTACACGGAAACTTATTCACCGGCGAGATTCCCGGTGTCCTGTTCCGTATGC AGAGCTTGGTGAGGCTTAATTTGGCTGATAATCGGTTCACCGGGTCGATCTCGCCCGATTTCAACAACTTGACCCGGTTGGCGACTCTGTTTTTGGAAGG GAATCAGCTCACCGGTCCGATCCCAAACATCAATGTCCCACCTTTGGATCAATTCAACGTCTCGTTCAACAATTTAACCGGACAGATTCCGGATTCTCTG TCGGGTAAACCAGCCGCCGCATTCGAAGGGAACTCCTTGCTCTGCGGACGACCTTTGGTCGTTTGCAGAGCAGGAGGAAGCAAATTCTCCAGCGGAGAAG TTGCCGGAATTGTGATCGGATGCGTGTTCGGATTTCTGCTGATTCTGATCATCCTCTTCTTCCTATGCCGGCAGAAGAAGAATCCTGACGAAACAGAGGA AGTTTCGTCCGCCCCGAAAATTGGGAATTCGAAATCACCAGAGAATTTGGTGTTCTTTGGGGAGACGCCGAGGGGTTTCAACCTGGAGGATTTGCTGAGG GCGTCGGCGGAGGTGTTGGGGAAAGGGACGTTTGGGACGACTTACAAGGCGACTCTGGATATGGGTTTTGTGACGGCGGTGAAGAGGTTGAAGGAGGTGA TTGTGGGGGAGAAAGAATACAGAGAGAAGATTGAAGGGATTGGGAAGATGGGGAATCATGAGAGCTTGGTGCCGTTGAAGGCTTATTATTACAGTAGGGA TGAGAAGCTTCTGGTTTATGAGTTCATGCCCATGGGAAGCTTGTCTGCGCTCTTACATGGAAACAGAGGAGGAGCAGGGAGGACGCCATTGACTTGGGAC ACGAGATTCACAATCGCACTCAAAGCCGCCAGAGGAATCGCATACCTACACTCTCAAGGCCCATCGATCTCCCACGGAAACATCAAATCATCAAACATCC TCCTCACCAAATCCTACGAGCCTCGAATCTCCGATTTCGGACTCAACCAAGTCGCAACCGGTCCAAACACTCTGAACCTGACCCGGCTCGAAGGGTACCG TGCCCCGGAAGTCACCGACGCCCACAAGGTATCCCAGAAGGCTGACGTGTACAGCTTCGGCGTTTTACTGCTGGAGCTGCTGACGGGGAAGGCGGCGGCT AACGCGGAGGGTGACGTGGAGCTACCGCGGTGGGTCCGGTCGGTTGTGAAGGAAGAATGGAGTTCTGAAGTGTTTGATCTTGAACTGATGAGGTACCAGA ATGTTGAGCAAGAGATGGTGAAGATGTTGCAGGTTGCCGTTGACTGTACGGTTCAGGTTCCCGACACGCGTCCTTCGATGGTTGAGGTTTGTGGGAGGAT CGAGGAGATCTGTCGGTTGAACGGCGGCGGCGGAAACTCCCAAGATGGCGGCGGGATTGTTGTAGATGACACGTCACGGCAGGAGCAGAGTTGGTCGGTT GATTCAGGGGCGCCAGCGCCGCAGTCCTCGTGA
AA sequence Show only first row Show all	>Lus10010973 pacid=23172447 polypeptide=Lus10010973 locus=Lus10010973.g ID=Lus10010973.BGIv1.0 annot-version=v1.0 MIPRPFFFLLAAALLLLTADSDLAADRAALVALRAAVGGRSLLWNLSDSSPCNWVGVNCAANRVVELRLPGMGLSGELPIGLGNLTQLIALSLRFNALRG SVPDDVSNLASLKNLYLHGNLFTGEIPGVLFRMQSLVRLNLADNRFTGSISPDFNNLTRLATLFLEGNQLTGPIPNINVPPLDQFNVSFNNLTGQIPDSL SGKPAAAFEGNSLLCGRPLVVCRAGGSKFSSGEVAGIVIGCVFGFLLILIILFFLCRQKKNPDETEEVSSAPKIGNSKSPENLVFFGETPRGFNLEDLLR ASAEVLGKGTFGTTYKATLDMGFVTAVKRLKEVIVGEKEYREKIEGIGKMGNHESLVPLKAYYYSRDEKLLVYEFMPMGSLSALLHGNRGGAGRTPLTWD TRFTIALKAARGIAYLHSQGPSISHGNIKSSNILLTKSYEPRISDFGLNQVATGPNTLNLTRLEGYRAPEVTDAHKVSQKADVYSFGVLLLELLTGKAAA NAEGDVELPRWVRSVVKEEWSSEVFDLELMRYQNVEQEMVKMLQVAVDCTVQVPDTRPSMVEVCGRIEEICRLNGGGGNSQDGGGIVVDDTSRQEQSWSV DSGAPAPQSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10010973 [exp]	0	1
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10019131 [exp]	1.7	0.8475
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	2.0	0.8645
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	2.8	0.8624
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	4.5	0.8447
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	5.9	0.8417
AT3G49060			U-box domain-containing protei...		Lus10039245 [exp]	8.1	0.7917
AT2G29970			Double Clp-N motif-containing ...		Lus10036183 [exp]	8.7	0.8110
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001876 [exp]	9.2	0.8338
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10039472 [exp]	9.5	0.8047
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033208 [exp]	9.9	0.8180

Compare expression of checked genes

Lus10010973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.