Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16610 352 / 6e-117 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031615 [exp] 134 / 1e-38 AT5G16610 84 / 2e-20 unknown protein Lus10000454 [exp] 82 / 3e-27 AT5G16610 70 / 9e-15 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130400 [exp] 454 / 4e-156 AT5G16610 389 / 5e-129 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010975 pacid=23172438 polypeptide=Lus10010975 locus=Lus10010975.g ID=Lus10010975.BGIv1.0 annot-version=v1.0 ATGGGCATAGAGTATCAAGGCAACAGAGTTACTTCCCCTACTGGTGTTGGTGTAGAACCGTTGAACTCTGCAATTAGTAGTAGCTCTGATTTTGTAGATG AGCTTGACCATATTGTTCTGAAAGAGCGACAAAGAATGCTGCTCATGTCAAGAAAAATGCAGTTGCCTGCAATGCCATCAAAGGAGGGATCTGTTGTGGT TGCAAATCCATTGGATGCAGTCGAAGTGAAGGCTGAACCGTTGGAAAATGTTGAAATAAGCAAGCCAGATGGAGTTTCCTTGGATATGTTTCTTGTGAAA ACTGAACCACAAATCCCAGACGGACTTCACGGGGACAACTTGGATTTAGATCACATGCAATTGCAAGATAGAATGAAGCTCCAAGCTGCAAATGATAATG CTAAATCAGAATCCAATGGTTATCAGCCTTTTCCTGCAGATCTTCCGCAAGTAAAGATTTCTCGTAGTCGAAAGAGGAAGAAGACAGCCACGGATTCTGT TGAGACGGCGCTTGAGGAAGATGCTCCAGGACTTCTACAGGTACTTGTGGAACAAGGAGTAACGGTGGACGAAATCAAGCTTTATGGAGTGGCTGATGGT GATGACGAACCCATAGATGAATCGTTCATTGAAGATGGATTCGAAGACCTTGAAGCTGTGATGTCAAAGCTGTTTTCCCAACGGAGCTCCCTTATAAAGC TTGCTCCCGTACGAAATGCAAATCTTTTGAAGCCGAATTATTGCTTAGCATGCCTATTCTCTCTTGTGGAACAGGCGAGATATCTTCAGTTCCGTGAATG GCCTGCTCAATGGGGTTGGTGCCGGGACCTCCGATCCTTCATATTCGTCTTTGAACGCCATAATAGAATAGTGCTCGAACGTCCTGAGTATGGATTTGCA ACATATTTCTTCGAGCTGGTTGATAATTCACCTGTTGAGTGGCAGATCAAGCGCTTAGTGCTTGCAATGAAGCTTACTGGTTGCGGAAGGATTACTCTAC TCGAGAACAAAGCTTTAAAGGTCGGAGAAGACTTGAGCGAGGGGGAAGCCAAGGTACTAATGCAGTACGGCTGGACACCAAACACTGGGGTAGCGACGAT GCTGAACTACTGCGACCGTGTAGTACACGACAGGAAGAGCGAGAAGGAAAGCTTGGAGTGGAAATCCAAAATAGGTAAGTTACTGATGGATGGATACAAT GGCGGAACTGTCGTCTCCTCCACGGCCGCCGTCCAACTGGCAACAGAAGAATGCAGCTTCAATGGCGATTTTTCTGGAGTTAAGTTGGAGCTTGAATCTT AA
AA sequence Show only first row Show all	>Lus10010975 pacid=23172438 polypeptide=Lus10010975 locus=Lus10010975.g ID=Lus10010975.BGIv1.0 annot-version=v1.0 MGIEYQGNRVTSPTGVGVEPLNSAISSSSDFVDELDHIVLKERQRMLLMSRKMQLPAMPSKEGSVVVANPLDAVEVKAEPLENVEISKPDGVSLDMFLVK TEPQIPDGLHGDNLDLDHMQLQDRMKLQAANDNAKSESNGYQPFPADLPQVKISRSRKRKKTATDSVETALEEDAPGLLQVLVEQGVTVDEIKLYGVADG DDEPIDESFIEDGFEDLEAVMSKLFSQRSSLIKLAPVRNANLLKPNYCLACLFSLVEQARYLQFREWPAQWGWCRDLRSFIFVFERHNRIVLERPEYGFA TYFFELVDNSPVEWQIKRLVLAMKLTGCGRITLLENKALKVGEDLSEGEAKVLMQYGWTPNTGVATMLNYCDRVVHDRKSEKESLEWKSKIGKLLMDGYN GGTVVSSTAAVQLATEECSFNGDFSGVKLELES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16610			unknown protein		Lus10010975 [exp]	0	1
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10032487 [exp]	1.0	0.8462
					Lus10033943 [exp]	2.0	0.8420
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	3.0	0.7936
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10034065 [exp]	3.3	0.7487
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10016771 [exp]	6.6	0.7928
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10023788 [exp]	7.5	0.7601
AT1G51610			Cation efflux family protein (...		Lus10033367 [exp]	16.4	0.7253
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10010191 [exp]	17.9	0.7437
AT5G51280			DEAD-box protein abstrakt, put...		Lus10012899 [exp]	18.7	0.7060
AT3G06440			Galactosyltransferase family p...		Lus10043102 [exp]	19.6	0.7603

Compare expression of checked genes

Lus10010975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.