Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17940 497 / 4e-178 Galactose mutarotase-like superfamily protein (.1) AT3G47800 335 / 6e-114 Galactose mutarotase-like superfamily protein (.1) AT5G15140 335 / 4e-112 Galactose mutarotase-like superfamily protein (.1) AT3G01260 211 / 8e-65 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000452 [exp] 591 / 0 AT3G17940 436 / 1e-154 Galactose mutarotase-like superfamily protein (.1) Lus10026181 [exp] 457 / 3e-162 AT3G17940 500 / 3e-179 Galactose mutarotase-like superfamily protein (.1) Lus10023611 [exp] 347 / 8e-119 AT3G47800 462 / 5e-164 Galactose mutarotase-like superfamily protein (.1) Lus10015365 [exp] 327 / 4e-110 AT5G15140 403 / 7e-138 Galactose mutarotase-like superfamily protein (.1) Lus10007251 [exp] 323 / 5e-109 AT5G15140 404 / 7e-139 Galactose mutarotase-like superfamily protein (.1) Lus10005251 [exp] 305 / 1e-102 AT5G15140 370 / 2e-126 Galactose mutarotase-like superfamily protein (.1) Lus10030673 [exp] 281 / 1e-90 AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1) Lus10024242 [exp] 116 / 5e-31 AT3G47800 155 / 3e-46 Galactose mutarotase-like superfamily protein (.1) Lus10042485 [exp] 108 / 1e-28 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129300 [exp] 528 / 0 AT3G17940 496 / 1e-177 Galactose mutarotase-like superfamily protein (.1) Potri.012G045875 [exp] 505 / 0 AT3G17940 555 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.012G128800 [exp] 349 / 1e-119 AT3G47800 459 / 1e-162 Galactose mutarotase-like superfamily protein (.1) Potri.017G080200 [exp] 327 / 1e-110 AT3G47800 406 / 9e-142 Galactose mutarotase-like superfamily protein (.1) Potri.004G129700 [exp] 327 / 1e-110 AT3G47800 414 / 5e-145 Galactose mutarotase-like superfamily protein (.1) Potri.017G080100 [exp] 317 / 1e-106 AT3G47800 397 / 3e-138 Galactose mutarotase-like superfamily protein (.1) Potri.017G080000 [exp] 312 / 5e-105 AT5G15140 432 / 3e-150 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10010976 pacid=23172465 polypeptide=Lus10010976 locus=Lus10010976.g ID=Lus10010976.BGIv1.0 annot-version=v1.0 ATGAGCATCACCGATCAGCAGCAGAGTCCCAAGGAACAGCCGCCGCGCCTTTTCGAGCTCAACAATGGGACAATCCGCGCCCAAATCACCAACTTTGGCG CCGCAATTACTTCCCTCTCCGTCCCCGACAAGGACGGAAATTTCTCCGACATCGTGCTCGGCTTCGATTCCGTCCAAAATTACATGGAAGGGAATCCATG TTATTTCGGATGCATAGTTGGGCGAGTGGCGAACAGAATCAAAGATGGGAAATTTAGTCTCGACGGAGTTGACTATTCTCTTCCTGTCAACAATGGCCCC AACAGTCTTCACGGTGGTAACAAAGGTTTCGACAAAGTCGTGTGGGATGTTGTGGAACATAACAGTAGTAGCGAACAGCCAACAGTAACTTTCAAGTACG AAAGTCATGATGGCGAGGAAGGATACCCGGGAGATGTAACCGTGACTGCAACTTACTCACTGACATCAAGCAACACAATGAGGCTGGATATGGAAGCGGT TCCTAAGGATAAGTCAACTCCGGTCAACTTAGCACAGCATACATACTGGAATCTAGGAGGCCACAAATCGGGCAGCATCCTCAACCATTCGGTTCAATTA TCAGCATCCAAGATCACTCCTATCGACCATCACTCGATCCCGACAGGAGAGATTCTCCCGGTTAAAGGCACTCCTTTCGACTTCACGACCGAGAAAAGGG TTGGAAGCTCGATTGGCGAAGTTGGTATAGGATATGATCACAACTATGTACTTGATTCCGGAGAAGAGAAGAAGGAAGCGGGTTTGAAGCATGTAGCTAA GGTGAAGGAGCCTTTGAATTGCAGGGTGCTGAATTTGTGGACTGATGCTCCCGGTGTGCAATTCTACACTGCGAATTACGTGGATGGTGTTAAGGGGAAA GAAGGTACGGTTTACGAGAAGCATTCCGGGTTGTGTCTCGAGACTCAAGGGTTTCCGAATGCTGTCAATCAGTCCGGTTTCCCGTCTGTTGTGGTTCGAC CTGGTGAGAAGTATAAGCACAGAATGTTGTTTGAGTTCTCTGTGGAGAAATAA
AA sequence Show only first row Show all	>Lus10010976 pacid=23172465 polypeptide=Lus10010976 locus=Lus10010976.g ID=Lus10010976.BGIv1.0 annot-version=v1.0 MSITDQQQSPKEQPPRLFELNNGTIRAQITNFGAAITSLSVPDKDGNFSDIVLGFDSVQNYMEGNPCYFGCIVGRVANRIKDGKFSLDGVDYSLPVNNGP NSLHGGNKGFDKVVWDVVEHNSSSEQPTVTFKYESHDGEEGYPGDVTVTATYSLTSSNTMRLDMEAVPKDKSTPVNLAQHTYWNLGGHKSGSILNHSVQL SASKITPIDHHSIPTGEILPVKGTPFDFTTEKRVGSSIGEVGIGYDHNYVLDSGEEKKEAGLKHVAKVKEPLNCRVLNLWTDAPGVQFYTANYVDGVKGK EGTVYEKHSGLCLETQGFPNAVNQSGFPSVVVRPGEKYKHRMLFEFSVEK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17940			Galactose mutarotase-like supe...		Lus10010976 [exp]	0	1
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10041843 [exp]	8.5	0.9132
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	12.4	0.9145
AT1G55265			Protein of unknown function, D...		Lus10039182 [exp]	18.1	0.8616
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015892 [exp]	21.2	0.9038
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10018843 [exp]	22.1	0.8972
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018702 [exp]	26.4	0.9084
					Lus10028391 [exp]	27.3	0.8831
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10022931 [exp]	28.7	0.8824
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	29.7	0.8948
AT2G27180			unknown protein		Lus10013375 [exp]	32.1	0.8970

Compare expression of checked genes

Lus10010976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.