Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37850 452 / 8e-162 SOS4, ATSOS4 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) AT1G22940 51 / 4e-07 THIE, TH-1, TH1 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000451 [exp] 543 / 0 AT5G37850 473 / 3e-170 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10028527 [exp] 487 / 3e-175 AT5G37850 464 / 8e-166 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10009119 [exp] 484 / 6e-174 AT5G37850 531 / 0.0 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10001365 [exp] 45 / 6e-05 AT1G22940 720 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1) Lus10015466 [exp] 44 / 0.0001 AT1G22940 734 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129000 [exp] 467 / 2e-167 AT5G37850 534 / 0.0 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Potri.003G015700 [exp] 52 / 3e-07 AT1G22940 710 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF08543 [flax] [poplar] Phos_pyr_kin Phosphomethylpyrimidine kinase
Representative CDS sequence Show only first row Show all	>Lus10010977 pacid=23172487 polypeptide=Lus10010977 locus=Lus10010977.g ID=Lus10010977.BGIv1.0 annot-version=v1.0 ATGAGCTCCAGCAAGTCGGAAACGGAGCCTCCGATCCTGTCTTTGGCTCTTCCTTCTGAGACCGGCCGGGTTCTTAGCATTCAGTCTCACACAGTGCAGG GATATGTTGGTTATCCAAGCTTCAAGGGACAAGTTTTGAATGGACAACAACTGTGGGAACTGATAGAAGGTCTTGAAGCAAATAACTTGTTATTCTATAC TCACTTGCTAACAGGTTATATAGGCTCAGTTTCATTTCTGAACACCGTATTGGAGGTCGTCAATAAGCTTCGCACAATAAACCCTAAACTTGCTTATGTT TGTGATCCAGTGATGGGCGATGAAGGAAAGCTGTATGTTCCTGAGGACCTGGTAGCAGTGTACAGGGAGAAGGTTGTTCCAGTGGCTTCAATGTTGACTC CTAATCAGTTTGAAGCTGAACAGTTAACTGGCTCTAGGATTGTGTCTGAAAGTGATGGCCGTGAGGCTTGCGATAAACTTCATGCTGCTGGACCTTCAAA GGTTGTGCTTACGAGCATTAACATAGGTGGTGGTCTTCTACTTATCGGCAGTCATCAGAAAGAAAAGGGCCAGTTGTCGCAACAATTCAAGATAGCCATA CCCAAAATTCCTGCTTTTTTCACGGGAACGGGGGATTTAATGACTGCACTTCTACTTGGATGGAGCAATAGATACCCCGACAACCTCGACAAGGCTGCGG AGCTTGCAGTATCAAGCTTGCAGGCTCTTCTGCAGAGGACAGTGGATGACTATCAAAAGGCTGGTTATGATCCAGCAGCAAGCAGTTTGGAAATTAGATT GATCCAGAGTCAAGACGACATTCGCAACCCGAATGTTCAATTCAAAGCTCAAAAGTATACTTGA
AA sequence Show only first row Show all	>Lus10010977 pacid=23172487 polypeptide=Lus10010977 locus=Lus10010977.g ID=Lus10010977.BGIv1.0 annot-version=v1.0 MSSSKSETEPPILSLALPSETGRVLSIQSHTVQGYVGYPSFKGQVLNGQQLWELIEGLEANNLLFYTHLLTGYIGSVSFLNTVLEVVNKLRTINPKLAYV CDPVMGDEGKLYVPEDLVAVYREKVVPVASMLTPNQFEAEQLTGSRIVSESDGREACDKLHAAGPSKVVLTSINIGGGLLLIGSHQKEKGQLSQQFKIAI PKIPAFFTGTGDLMTALLLGWSNRYPDNLDKAAELAVSSLQALLQRTVDDYQKAGYDPAASSLEIRLIQSQDDIRNPNVQFKAQKYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10010977 [exp]	0	1
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	11.1	0.7885
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	14.0	0.7860
AT4G27510			unknown protein		Lus10004528 [exp]	18.3	0.7814
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10002760 [exp]	22.4	0.7326
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10040038 [exp]	23.5	0.7544
AT3G54460			SNF2 domain-containing protein...		Lus10024158 [exp]	28.1	0.7719
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10012939 [exp]	29.1	0.7604
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10028590 [exp]	31.6	0.7553
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	37.5	0.7453
AT1G28540			unknown protein		Lus10042196 [exp]	42.0	0.7207

Compare expression of checked genes

Lus10010977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.