Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66520 475 / 7e-169 PDE194 pigment defective 194, formyltransferase, putative (.1) AT5G47435 56 / 1e-08 formyltetrahydrofolate deformylase, putative (.1.2) AT4G17360 56 / 1e-08 Formyl transferase (.1) AT1G31220 47 / 1e-05 Formyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000450 [exp] 663 / 0 AT1G66520 510 / 0.0 pigment defective 194, formyltransferase, putative (.1) Lus10028958 [exp] 54 / 7e-08 AT5G47435 498 / 3e-179 formyltetrahydrofolate deformylase, putative (.1.2) Lus10013428 [exp] 50 / 1e-06 AT1G31220 326 / 4e-112 Formyl transferase (.1) Lus10040974 [exp] 49 / 4e-06 AT1G31220 327 / 3e-112 Formyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G123300 [exp] 504 / 4e-180 AT1G66520 516 / 0.0 pigment defective 194, formyltransferase, putative (.1) Potri.003G078000 [exp] 56 / 1e-08 AT5G47435 484 / 7e-174 formyltetrahydrofolate deformylase, putative (.1.2) Potri.001G156600 [exp] 54 / 4e-08 AT5G47435 476 / 2e-170 formyltetrahydrofolate deformylase, putative (.1.2) Potri.012G107500 [exp] 54 / 5e-08 AT1G31220 337 / 1e-116 Formyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00551 [flax] [poplar] Formyl_trans_N Formyl transferase PF02911 [flax] [poplar] Formyl_trans_C Formyl transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010978 pacid=23172526 polypeptide=Lus10010978 locus=Lus10010978.g ID=Lus10010978.BGIv1.0 annot-version=v1.0 ATGAATTCATCAATGATGCTTCGTCGCTTCTGCTGCTTTAACGCAGCAGCAACTCCAGCTTCCTCCAAGAAGAAGCCACTCGTGTCGGCAACTGTTCTTG ATTCCCTTTTCAACGCATCCTCCTCGCCCAGCTCCATCTTTGAAGTGGCGGCAATCGTGACGCAGCCGCCTGCAAGAAGAGGAAGGGGCAAAAAGCTGAC TCCTTCACCAGTAGCTCAGCACGCCCTTGACAGAGGTTTCCCCTCTGACCTCATTTTCACTCCTGAAAAGGCCGGTGAGGAGACGTTCTTGCGTAGTCTA AGAGCATTGCAGCCAGAGCTTTGTGTTACTGCTGCGTATGGCAATATACTCCCCACCAAGTTCCTCAACATTCCACCAATGGGGACGGTCAACATACATC CGAGTCTGCTGCCACTTTATCGTGGTGCTGCTCCAGTTCAAAGAGCCATACAGGATGGTGTCAAAGAAACCGGAGTGTCTTTAGCGTTCACTGTCCGTGC GTTGGATTCGGGACCCATCATTGCGCGTCAAACATTAGAAGTCGATGATCACATTAAGGCTCCTGAATTGCTTTCTTTGTTATTTGATGAAGGAACAAAG CTTCTGATTCAAGAGCTCCCTTCTTTGTTCGACGGAACAGCCAATGAAAAGGCTGAGCCGCAAGATGATTCAAATGCCACCCTAGCTCCAAAGATAACTG CTGAGGAATCTTGGCTAGCCTTTGATCAGGAAGAAGCCACCATCCTACATAACAAGGTACGAGCATTTGCAGGATGGCCTGGTACCCGAGCAAAAGTAGT AGTTATCGACACTGCAAACGGCCAAGAAGAGACTCTAGACCTTAAGGTCATCACCACAAGAGTTTCTTCTCACCACATGAATGAAGAAGAAGAAGAAGAA GATGATGATGATGATGTCAGCTTTGCAAATGGTGCTTTGGTATTCCCGTGTGCAAATTCCACAAGGCTGCAAGTGTTGGAGGTTCAGCTTCCTGGGAAAA AGGCCGTAGCTGCTGCATCGTTCTGGAACGGCTTACGTGGTCGAAAGCTCAAGACTCTGAAGGCGGAACAGATTTTAACTCTGGCTATGTCCCAAATGTA A
AA sequence Show only first row Show all	>Lus10010978 pacid=23172526 polypeptide=Lus10010978 locus=Lus10010978.g ID=Lus10010978.BGIv1.0 annot-version=v1.0 MNSSMMLRRFCCFNAAATPASSKKKPLVSATVLDSLFNASSSPSSIFEVAAIVTQPPARRGRGKKLTPSPVAQHALDRGFPSDLIFTPEKAGEETFLRSL RALQPELCVTAAYGNILPTKFLNIPPMGTVNIHPSLLPLYRGAAPVQRAIQDGVKETGVSLAFTVRALDSGPIIARQTLEVDDHIKAPELLSLLFDEGTK LLIQELPSLFDGTANEKAEPQDDSNATLAPKITAEESWLAFDQEEATILHNKVRAFAGWPGTRAKVVVIDTANGQEETLDLKVITTRVSSHHMNEEEEEE DDDDDVSFANGALVFPCANSTRLQVLEVQLPGKKAVAAASFWNGLRGRKLKTLKAEQILTLAMSQM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	0	1
AT1G28530			unknown protein		Lus10015294 [exp]	1.7	0.8609
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	2.4	0.8598
AT4G37920			unknown protein		Lus10029560 [exp]	2.4	0.8568
AT5G19750			Peroxisomal membrane 22 kDa (M...		Lus10012098 [exp]	5.7	0.8214
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	6.3	0.8307
AT3G60520			unknown protein		Lus10042880 [exp]	7.7	0.7993
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	8.4	0.8010
AT5G17660			tRNA (guanine-N-7) methyltrans...		Lus10015923 [exp]	8.8	0.7593
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	8.8	0.8237
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10035444 [exp]	9.4	0.8115

Compare expression of checked genes

Lus10010978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.