Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66670 288 / 2e-96 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT5G45390 184 / 3e-56 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G02560 174 / 2e-52 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT5G23140 148 / 5e-43 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) AT1G11750 141 / 7e-40 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) ATCG00670 127 / 3e-35 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1) AT1G12410 121 / 2e-32 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) AT1G09130 100 / 4e-24 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT1G49970 96 / 3e-22 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) AT4G17040 94 / 6e-22 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000449 [exp] 629 / 0 AT1G66670 285 / 1e-95 CLP protease proteolytic subunit 3 (.1) Lus10007589 [exp] 180 / 5e-55 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10012156 [exp] 178 / 3e-54 AT5G45390 293 / 1e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10002422 [exp] 174 / 2e-52 AT1G02560 361 / 4e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10001450 [exp] 174 / 1e-51 AT1G02560 365 / 1e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10025022 [exp] 153 / 4e-44 AT1G02560 313 / 3e-107 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10010003 [exp] 152 / 5e-44 AT1G02560 308 / 2e-105 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10010196 [exp] 150 / 1e-43 AT5G23140 395 / 4e-141 nuclear-encoded CLP protease P7 (.1) Lus10017397 [exp] 148 / 6e-43 AT5G23140 394 / 1e-140 nuclear-encoded CLP protease P7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G092100 [exp] 328 / 7e-112 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.003G103300 [exp] 180 / 1e-54 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.002G195200 [exp] 174 / 2e-52 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.014G119700 [exp] 174 / 2e-52 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.007G071700 [exp] 150 / 3e-43 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.001G130601 [exp] 146 / 1e-42 AT5G45390 239 / 2e-79 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.005G092600 [exp] 146 / 3e-42 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.004G152900 [exp] 144 / 6e-41 AT1G11750 397 / 4e-141 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.009G114001 [exp] 142 / 3e-40 AT1G11750 353 / 2e-123 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.001G115900 [exp] 108 / 2e-27 AT1G12410 408 / 3e-145 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00574 [flax] [poplar] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Lus10010979 pacid=23172467 polypeptide=Lus10010979 locus=Lus10010979.g ID=Lus10010979.BGIv1.0 annot-version=v1.0 ATGGAGCTAGGTTTGACCTTCACTACACCGTCGCAATCAGCTACCCCTCTCTGCTTCTCCAATTGTGCTTTCCTCCGCCAGCAACGAAACCGATTATCAA TTAAGGCCATGAGCAGCTCAAGCGTTACAGGAAGACGAACTCTGAGCAGCAACTGGGACACCAAGTGTTCATCCTCTTTGCCCATTTCGGCTCCCCGCAT GCCCGGATTCAAAGAGCTCGATACTACCAGGGCGCTCCTCAGTCAAAGAACTCTCTTTCTCAGCTCGGAGGTTGATGACATTGTAGCTGATCTTATCATA AACCAGCTATTAATTCTGGATGCTGATGATCCAACCAAGGACATCAAGATTATCATCAATTCGCCTGGTGGTTCTATCACTTCTGCAATGGGGATCTATG ATGCGATCAAGTATTGCAAAGCTGATGTTTCGACTGTATGTTTTGGCATCGCGGCATCTATGGGAGCACTGATCCTTCTCAGTGGCACCAAAGGCAAGAG GTTTTGCATGCCCAATGCCAGGGTCATGATACATCAACTACATGGAATTGGCGGAGGCAGTCCATTAGACGGCCAGATAAGTGTGAAAGAAATGAACTAC CACATGCTTAAAGTCAACAAGATCATATCACGATCCACAGGCCAGCCACTGGAGAAGGTTGTAAAGGACACCGAGTATGATTACTACATGAACGCTTGGG AGGCTAAAGCTTACGGGATAGTGGACCAAGTGATTGACGATGGCAAACCAGGGCTGGTGGCACCTATCACGGATGCTTCCCCTGCACCGATTTACGGAGC CTCAAAATATTTGACTCCCGAGGCTCGTGATGGAGCCCCCACCGACAAGATTTTGCCCTTGGAGCGTAGAAACTTGCAGGAGAAGGCGAAGCAGAAGGAC GACAAGCTGGTTTTCCGTCCAGGCGTCGAGGATCCAAACACACTGTTGCTTTTTAGATGA
AA sequence Show only first row Show all	>Lus10010979 pacid=23172467 polypeptide=Lus10010979 locus=Lus10010979.g ID=Lus10010979.BGIv1.0 annot-version=v1.0 MELGLTFTTPSQSATPLCFSNCAFLRQQRNRLSIKAMSSSSVTGRRTLSSNWDTKCSSSLPISAPRMPGFKELDTTRALLSQRTLFLSSEVDDIVADLII NQLLILDADDPTKDIKIIINSPGGSITSAMGIYDAIKYCKADVSTVCFGIAASMGALILLSGTKGKRFCMPNARVMIHQLHGIGGGSPLDGQISVKEMNY HMLKVNKIISRSTGQPLEKVVKDTEYDYYMNAWEAKAYGIVDQVIDDGKPGLVAPITDASPAPIYGASKYLTPEARDGAPTDKILPLERRNLQEKAKQKD DKLVFRPGVEDPNTLLLFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	0	1
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10014100 [exp]	1.0	0.8758
AT3G61530		PANB2	Phosphoenolpyruvate carboxylas...		Lus10010142 [exp]	3.0	0.8637
AT4G33480			unknown protein		Lus10020876 [exp]	4.0	0.8625
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	6.8	0.8650
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	6.9	0.8462
AT4G12060			Double Clp-N motif protein (.1...		Lus10031694 [exp]	7.4	0.8573
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10021043 [exp]	7.9	0.8394
AT5G23070			Thymidine kinase (.1)		Lus10039055 [exp]	12.0	0.8124
AT4G33760			tRNA synthetase class II (D, K...		Lus10035657 [exp]	12.4	0.8462
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10014196 [exp]	13.0	0.8228

Compare expression of checked genes

Lus10010979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.