Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77840 141 / 4e-39 Translation initiation factor IF2/IF5 (.1) AT1G36730 118 / 2e-30 Translation initiation factor IF2/IF5 (.1) AT5G36230 42 / 0.0004 ARM repeat superfamily protein (.1) AT1G65220 41 / 0.0005 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000448 [exp] 377 / 5e-131 AT1G36730 423 / 7e-147 Translation initiation factor IF2/IF5 (.1) Lus10004057 [exp] 258 / 8e-84 AT1G36730 505 / 4e-178 Translation initiation factor IF2/IF5 (.1) Lus10002283 [exp] 257 / 2e-83 AT1G36730 505 / 6e-178 Translation initiation factor IF2/IF5 (.1) Lus10029667 [exp] 42 / 0.0002 AT5G36230 320 / 1e-109 ARM repeat superfamily protein (.1) Lus10042703 [exp] 42 / 0.0004 AT5G36230 631 / 0.0 ARM repeat superfamily protein (.1) Lus10018182 [exp] 42 / 0.0006 AT5G36230 623 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093600 [exp] 221 / 2e-69 AT1G77840 514 / 0.0 Translation initiation factor IF2/IF5 (.1) Potri.004G112200 [exp] 196 / 6e-60 AT1G77840 493 / 2e-173 Translation initiation factor IF2/IF5 (.1) Potri.017G122200 [exp] 184 / 5e-55 AT1G77840 456 / 1e-158 Translation initiation factor IF2/IF5 (.1) Potri.013G085600 [exp] 42 / 0.0004 AT5G36230 687 / 0.0 ARM repeat superfamily protein (.1) Potri.019G053600 [exp] 42 / 0.0004 AT5G36230 694 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02020 [flax] [poplar] W2 eIF4-gamma/eIF5/eIF2-epsilon
Representative CDS sequence Show only first row Show all	>Lus10010980 pacid=23172479 polypeptide=Lus10010980 locus=Lus10010980.g ID=Lus10010980.BGIv1.0 annot-version=v1.0 ATGAGGAGAGCTGAGAATGAACGGCTTAAGGAAGGCGAGGTAGCTGATGAGGAGCTGAAGAAACTGAAGAAGGATGTCAAGAAGAAGGTTTCTCCTTCTA AGATGGGAAGTACGAAGAAGAAAGCTGGTGACTCGGATGAAGAACGTGTATCGCCAACTCACAGTCAGGTTGATGAGAAGGAAGAGGGCCGTGATGATGG GGATGATGACGATGATGATGTGCTATGGCACACTGATACATCAGCAGAAGCAGCTCGTAATATTCAGGAACAATTGAGTGCTGCAACTGCCGAAATGGTC ATGCTTACTACAATGGAAACAGAAAAGAAGGCCAATGATACTGCGAAAGCGAATGGAAGCCCTAAGAAAGCTGTTTCTCCAAAACCAGTGACTCTCGCTG AAGAACTGAAAGCAAGCGTCGGCAAAGGACTTACTGCCAGCCAGTTGCCTGGTGTTATGGATTCGCTATCTGGATCAGCAAACGAAAAGATGGATGCTTT GTCCGCGGCATTGTTTCAGGGTACCGAGAAGGGGCTTGGGAAGGAGGTTGTGAAAAAGAAGAAATATCTGGCTGCTGCACTTGCTCATTTTGGAGAAGGT TCCCAGTTGGTTCTACTCGAATTGATCCAAGGTTTCTTTGAGGTGTCCAATTCAGTGAAGCAAGTGGCTCTTGTTCTCAAAGCTCTCTATGATGCTGCTG ATGTTTTGGAGGAAGAGAACGTTATGCAGTGGTACAAGAAGCTGAAGGGTGTCAACAAAGGTAACAAGATTGTGAAGAGTGCTGAGCCGTTTATTGATTG GCTCCAGAATGCCGAATCCGAGACCGAAGAGGAATAA
AA sequence Show only first row Show all	>Lus10010980 pacid=23172479 polypeptide=Lus10010980 locus=Lus10010980.g ID=Lus10010980.BGIv1.0 annot-version=v1.0 MRRAENERLKEGEVADEELKKLKKDVKKKVSPSKMGSTKKKAGDSDEERVSPTHSQVDEKEEGRDDGDDDDDDVLWHTDTSAEAARNIQEQLSAATAEMV MLTTMETEKKANDTAKANGSPKKAVSPKPVTLAEELKASVGKGLTASQLPGVMDSLSGSANEKMDALSAALFQGTEKGLGKEVVKKKKYLAAALAHFGEG SQLVLLELIQGFFEVSNSVKQVALVLKALYDAADVLEEENVMQWYKKLKGVNKGNKIVKSAEPFIDWLQNAESETEEE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36730			Translation initiation factor ...		Lus10010980 [exp]	0	1
AT3G51940			unknown protein		Lus10039572 [exp]	2.4	0.8572
AT1G67620			Lojap-related protein (.1)		Lus10015822 [exp]	6.3	0.8470
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	8.1	0.8562
AT5G14100		ABCI11, ATNAP14	ARABIDOPSIS THALIANANON-INTRIN...		Lus10032025 [exp]	8.2	0.8472
AT1G57790			F-box family protein (.1)		Lus10021352 [exp]	10.5	0.8196
AT5G51510			unknown protein		Lus10027200 [exp]	11.4	0.8473
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10017390 [exp]	13.0	0.8464
AT3G18510			unknown protein		Lus10032475 [exp]	15.3	0.8342
AT2G25310			Protein of unknown function (D...		Lus10001955 [exp]	17.5	0.8468
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Lus10005977 [exp]	17.9	0.8104

Compare expression of checked genes

Lus10010980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.