Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36730 282 / 2e-95 Translation initiation factor IF2/IF5 (.1) AT1G77840 271 / 3e-91 Translation initiation factor IF2/IF5 (.1) AT5G20920 54 / 2e-09 EIF2 BETA, EMB1401, EIF2BETA embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002283 [exp] 298 / 2e-101 AT1G36730 505 / 6e-178 Translation initiation factor IF2/IF5 (.1) Lus10004057 [exp] 296 / 9e-101 AT1G36730 505 / 4e-178 Translation initiation factor IF2/IF5 (.1) Lus10000448 [exp] 224 / 2e-73 AT1G36730 423 / 7e-147 Translation initiation factor IF2/IF5 (.1) Lus10007559 [exp] 52 / 2e-08 AT5G20920 385 / 3e-136 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Lus10012186 [exp] 40 / 0.0002 AT5G20920 373 / 3e-131 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093600 [exp] 295 / 1e-100 AT1G77840 514 / 0.0 Translation initiation factor IF2/IF5 (.1) Potri.004G112200 [exp] 291 / 9e-99 AT1G77840 493 / 2e-173 Translation initiation factor IF2/IF5 (.1) Potri.017G122200 [exp] 290 / 2e-98 AT1G77840 456 / 1e-158 Translation initiation factor IF2/IF5 (.1) Potri.013G158400 [exp] 54 / 3e-09 AT5G20920 396 / 7e-141 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.019G131200 [exp] 54 / 4e-09 AT5G20920 399 / 7e-142 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01873 [flax] [poplar] eIF-5_eIF-2B Domain found in IF2B/IF5
Representative CDS sequence Show only first row Show all	>Lus10010981 pacid=23172493 polypeptide=Lus10010981 locus=Lus10010981.g ID=Lus10010981.BGIv1.0 annot-version=v1.0 ATGGCTTTGCAGAACATTGGTGCTTCAAACAGCGATGATGCCTTCTACAGGTATAAGATGCCCAGAATGGTGACGAAAACCGAGGGCAGAGGAAACGGTA TCAAGACCAACATTGTCAACATGGTTGACATTGCAAAGGCTTTGGCGAGGCCTGCTTCTTATACTACAAAGTATTTTGGTTGTGAGCTCGGTGCTCAGTC AAAATTCGACGAGAAGACTGGTATTTTGCTGGTGAATGGTCAGCATGACACTGCAAAGCTTGCGGGGCTTTTGGAGATCTTCATAAAGAAGTATGTTCAG TGGTATGGCTGTGGGAATCCTGAAACCGAGATACTTATCACCAAAAGCCAGATGCTCCAGCTTAAATGTGCTGCCTGTGGTTTTGTCTCTGATGTGGATA TGAGAGATAAGCTGACTACTTTTATCTTGAAGAATCCGCCCTAA
AA sequence Show only first row Show all	>Lus10010981 pacid=23172493 polypeptide=Lus10010981 locus=Lus10010981.g ID=Lus10010981.BGIv1.0 annot-version=v1.0 MALQNIGASNSDDAFYRYKMPRMVTKTEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGILLVNGQHDTAKLAGLLEIFIKKYVQ WYGCGNPETEILITKSQMLQLKCAACGFVSDVDMRDKLTTFILKNPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36730			Translation initiation factor ...		Lus10010981 [exp]	0	1
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10013349 [exp]	1.0	0.8896
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	11.2	0.8573
AT5G10290			leucine-rich repeat transmembr...		Lus10000629 [exp]	12.7	0.8361
AT4G16800			ATP-dependent caseinolytic (Cl...		Lus10010994 [exp]	19.2	0.8305
AT1G25500			Plasma-membrane choline transp...		Lus10041476 [exp]	19.6	0.8104
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	27.1	0.8361
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	29.1	0.8079
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10011437 [exp]	31.9	0.7899
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10034853 [exp]	45.8	0.8037
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10028862 [exp]	52.0	0.7545

Compare expression of checked genes

Lus10010981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.