Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37710 342 / 2e-116 alpha/beta-Hydrolases superfamily protein (.1) AT3G49050 295 / 2e-97 alpha/beta-Hydrolases superfamily protein (.1) AT4G00500 251 / 7e-81 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G42450 45 / 4e-05 alpha/beta-Hydrolases superfamily protein (.1) AT4G16070 44 / 8e-05 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000445 [exp] 489 / 1e-176 AT5G37710 385 / 1e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10039240 [exp] 278 / 8e-92 AT3G49050 624 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10027485 [exp] 276 / 1e-90 AT3G49050 616 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 260 / 3e-84 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10030391 [exp] 197 / 2e-60 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10005809 [exp] 124 / 1e-34 AT5G37710 144 / 1e-41 alpha/beta-Hydrolases superfamily protein (.1) Lus10015680 [exp] 47 / 8e-06 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10008121 [exp] 47 / 2e-05 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10013158 [exp] 47 / 2e-05 AT3G14075 754 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086900 [exp] 399 / 2e-138 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G130000 [exp] 391 / 1e-135 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G142700 [exp] 296 / 2e-98 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G145900 [exp] 295 / 4e-98 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G083600 [exp] 263 / 2e-85 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G159200 [exp] 259 / 4e-84 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G067900 [exp] 46 / 2e-05 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.005G222000 [exp] 44 / 0.0001 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G005800 [exp] 43 / 0.0002 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.008G211200 [exp] 42 / 0.0003 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10010983 pacid=23172523 polypeptide=Lus10010983 locus=Lus10010983.g ID=Lus10010983.BGIv1.0 annot-version=v1.0 ATGGTTTTTGCTGGGCATTCGTTGGGTTCTGGTGTGGCGGCGTTGTTGAGTGTGATTGTAGTGAATCATAGGGAGAGATTAGGTGGGATTCCTAGAGAGA AGATCAAGTGTTATGCGATTGCTCCTGCTAGGTGTATGTCTCTTAATTTGGCTGTCAAGTATGCTGATGTTATTCACTCCATTGTCTTGCAGGATGATTT CCTGCCAAGAACTCCGACTCCGTTGGAAGATATTTTCAAGTCAATCTTCTGCTTGCCTTGCTTGCTGTTTTTGGTCTGCTTGAGGGATACATTCATCCCA GAAGGTAGGAAGCTCAGAGATCCCAGAAGACTGTACGCTCCGGGGAGAATCTATCACATCATCGAGCGGAAATTCTGCAGGTGTGGGAGGTTTCCGCCTG AGATTAGGACCGCCATTCCAGTAGATGGAAGATTCGAACACATCGTGCTATCGTGCAATGCCACTTCGGATCACGCAATCATCTGGATCGAACGGGAAGC AGAGAAGGCACTAAGTAGAATGAAGGAAGAGAACGGCGGGGGCACGACAGCAGCTCCAAAAGCACAGAAAATGGAGAGGATTCAGACACTGGAAAAGGAG CACAAAGACGCACTGGACAGAGCAGTGAGCTTGAATGTACCGCATGCCGTAAGCGATGCAGAGACAGGTGAAGAACAAGGAGAAGAAGCATCTGTAAGCA AAGAGGAGGAAGGAGAACATAGCCAATCCCAGGAGAAAGAGAAGGGAGAAGGAAGCGCGAAGAGCAAGTCACCGGGGAGAACCAACTGGGATGAACTTGT AAAGAAATTGTTCAAAAAGGGTGACTCGGGTGTTGTGACTGTTAACAAAGATGTAACAATAACTGAAGACAGATAG
AA sequence Show only first row Show all	>Lus10010983 pacid=23172523 polypeptide=Lus10010983 locus=Lus10010983.g ID=Lus10010983.BGIv1.0 annot-version=v1.0 MVFAGHSLGSGVAALLSVIVVNHRERLGGIPREKIKCYAIAPARCMSLNLAVKYADVIHSIVLQDDFLPRTPTPLEDIFKSIFCLPCLLFLVCLRDTFIP EGRKLRDPRRLYAPGRIYHIIERKFCRCGRFPPEIRTAIPVDGRFEHIVLSCNATSDHAIIWIEREAEKALSRMKEENGGGTTAAPKAQKMERIQTLEKE HKDALDRAVSLNVPHAVSDAETGEEQGEEASVSKEEEGEHSQSQEKEKGEGSAKSKSPGRTNWDELVKKLFKKGDSGVVTVNKDVTITEDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10010983 [exp]	0	1
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10000445 [exp]	1.4	0.9229
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10036136 [exp]	2.0	0.9019
AT1G74830			Protein of unknown function, D...		Lus10033123 [exp]	2.2	0.8849
AT4G02410			Concanavalin A-like lectin pro...		Lus10033777 [exp]	3.0	0.8932
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	6.0	0.8831
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10025569 [exp]	8.8	0.7679
AT4G28400			Protein phosphatase 2C family ...		Lus10028094 [exp]	9.2	0.8867
AT2G23140			RING/U-box superfamily protein...		Lus10011516 [exp]	9.2	0.8393
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	9.9	0.8453
AT3G13880			Tetratricopeptide repeat (TPR)...		Lus10004114 [exp]	11.0	0.8211

Compare expression of checked genes

Lus10010983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.