Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60410 81 / 2e-17 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) AT4G17440 79 / 2e-17 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT1G25370 74 / 3e-15 Protein of unknown function (DUF1639) (.1) AT3G18295 58 / 5e-10 Protein of unknown function (DUF1639) (.1) AT1G68340 56 / 3e-09 Protein of unknown function (DUF1639) (.1) AT4G20300 55 / 1e-08 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT3G03880 51 / 1e-07 Protein of unknown function (DUF1639) (.1) AT1G48770 49 / 7e-07 Protein of unknown function (DUF1639) (.1) AT1G55340 47 / 3e-06 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004378 [exp] 173 / 8e-52 AT4G17440 96 / 4e-23 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10040176 [exp] 82 / 2e-18 AT3G60410 76 / 1e-16 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10035144 [exp] 70 / 7e-14 AT1G25370 87 / 2e-20 Protein of unknown function (DUF1639) (.1) Lus10010650 [exp] 52 / 4e-08 AT1G55340 148 / 3e-46 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010312 [exp] 52 / 7e-08 AT1G55340 254 / 1e-86 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10038379 [exp] 50 / 5e-07 AT4G20300 188 / 1e-58 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10036240 [exp] 50 / 9e-07 AT4G20300 217 / 3e-67 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10038942 [exp] 45 / 2e-06 AT1G25370 72 / 7e-17 Protein of unknown function (DUF1639) (.1) Lus10027232 [exp] 46 / 4e-06 AT1G68340 75 / 3e-17 Protein of unknown function (DUF1639) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G136200 [exp] 84 / 9e-19 AT3G60410 109 / 6e-28 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.008G122600 [exp] 79 / 6e-17 AT1G25370 100 / 6e-25 Protein of unknown function (DUF1639) (.1) Potri.010G122700 [exp] 78 / 1e-16 AT1G25370 110 / 1e-28 Protein of unknown function (DUF1639) (.1) Potri.012G055200 [exp] 64 / 7e-12 AT3G18295 109 / 3e-29 Protein of unknown function (DUF1639) (.1) Potri.014G044600 [exp] 61 / 2e-11 ND / Potri.014G044700 [exp] 57 / 8e-10 ND / Potri.003G157500 [exp] 57 / 3e-09 AT4G20300 201 / 2e-61 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.001G073400 [exp] 56 / 5e-09 AT4G20300 226 / 3e-71 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.006G233100 [exp] 56 / 7e-09 AT1G55340 130 / 9e-37 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.018G059200 [exp] 55 / 1e-08 AT1G55340 133 / 3e-38 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [flax] [poplar] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Lus10010984 pacid=23148681 polypeptide=Lus10010984 locus=Lus10010984.g ID=Lus10010984.BGIv1.0 annot-version=v1.0 ATGGCGACAGCTCCGTTGAAGGCACAGTCGAAGCCGCTCCACAACTTCCCTCTTCCGCTAAAATGGAGCCAAATCGCCGGCGGGAACACCAGCAGCTCTC GTACCGCTCCGCAGCCGGAGGCTGAGTCCGATCCAGATGCTGTCGTCAAGCATCACCGTTCGCCACCTCCGCTGTCGACGAATGGAAGTCCAGGCGTTGC TCCTCATCCGGTTGGATCGAGGTCCGCTCGGCAGCAGCGGTTCGCCTTCAACTCCTGTTCGAAGGCTTCCACGATCCTCCTCTCCAAGCCGGTGTCCTTG GCGTCGAAGGACAAGCAGCAGATGACGGTGGTCGAGAAGGAAGCTACCGGCGGTCGGAGAGGAGGAGGATCGGGAGAGGAAGCTGGAGATCCGAGGCCGT GGAAGTTAAGGCCGAGGAGAGGACTCGCTTCTTGCTCGGGAAAAACCCACCAAGACGGCGAACTCGCCAAGCAACCAAAGGATCTCGCGCGACATACTCC ACCTCCGGTGACGAAGTCCAACAGGCCGTCGCGAGGATCGGCGGAGGCCGGAGCTGAAAGCGGATTTCTGACGAGGAAGGGGAAGAGGAAGTTCTGGATC GCTCTGTCGAAGGAAGAGATTGAAGAAGACGTTTACAGTTTGACAGGTTCAAGACCAGCTAGGCGTCCCCAGAAACGGCCCAAGAACATCCAGAAATCGG TTGACAACGTGTTTCCTGGTTTGTGGCTAGTTGGCTCTACAGTTGATTCATACAAAACTCCCGATCCTCCAATAAAGGTTTTCCATTCATTTTTGCCCTC ATCCAGCTAA
AA sequence Show only first row Show all	>Lus10010984 pacid=23148681 polypeptide=Lus10010984 locus=Lus10010984.g ID=Lus10010984.BGIv1.0 annot-version=v1.0 MATAPLKAQSKPLHNFPLPLKWSQIAGGNTSSSRTAPQPEAESDPDAVVKHHRSPPPLSTNGSPGVAPHPVGSRSARQQRFAFNSCSKASTILLSKPVSL ASKDKQQMTVVEKEATGGRRGGGSGEEAGDPRPWKLRPRRGLASCSGKTHQDGELAKQPKDLARHTPPPVTKSNRPSRGSAEAGAESGFLTRKGKRKFWI ALSKEEIEEDVYSLTGSRPARRPQKRPKNIQKSVDNVFPGLWLVGSTVDSYKTPDPPIKVFHSFLPSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60410			Protein of unknown function (D...		Lus10010984 [exp]	0	1
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	11.9	0.7527
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019281 [exp]	15.5	0.7260
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011585 [exp]	19.6	0.7454
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002032 [exp]	34.9	0.7205
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	36.9	0.7228
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10009342 [exp]	45.8	0.7138
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10028934 [exp]	49.2	0.7127
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	51.7	0.7199
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	56.6	0.7169
AT5G58300			Leucine-rich repeat protein ki...		Lus10034258 [exp]	63.5	0.7116

Compare expression of checked genes

Lus10010984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.