Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05620 98 / 3e-26 TUBG2 ,ATGCP2 GAMMA-TUBULIN 2, ARABIDOPSIS THALIANA GAMMA-TUBULIN COMPLEX PROTEIN 2, gamma-tubulin complex protein 2 (.1) AT3G61650 98 / 4e-26 TUBG1 gamma-tubulin (.1) AT5G23860 52 / 1e-09 TUB8, b-TUB tubulin beta 8 (.1.2) AT5G62700 52 / 2e-09 atgcp3, TUB3 tubulin beta chain 3 (.1) AT5G62690 52 / 2e-09 TUB2 tubulin beta chain 2 (.1) AT4G20890 51 / 2e-09 TUB9 tubulin beta-9 chain (.1) AT5G44340 51 / 2e-09 TUB4 tubulin beta chain 4 (.1) AT1G20010 51 / 2e-09 TUB5 tubulin beta-5 chain (.1) AT5G12250 50 / 4e-09 TUB6 beta-6 tubulin (.1) AT2G29550 50 / 6e-09 TUB7 tubulin beta-7 chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007851 [exp] 93 / 4e-24 AT3G61650 938 / 0.0 gamma-tubulin (.1) Lus10039231 [exp] 53 / 5e-10 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10027476 [exp] 53 / 5e-10 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10040712 [exp] 52 / 1e-09 AT5G23860 923 / 0.0 tubulin beta 8 (.1.2) Lus10016448 [exp] 52 / 1e-09 AT5G23860 921 / 0.0 tubulin beta 8 (.1.2) Lus10002000 [exp] 51 / 2e-09 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10035497 [exp] 51 / 2e-09 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10008528 [exp] 51 / 3e-09 AT5G12250 837 / 0.0 beta-6 tubulin (.1) Lus10038458 [exp] 51 / 3e-09 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G167800 [exp] 99 / 3e-26 AT5G05620 958 / 0.0 GAMMA-TUBULIN 2, ARABIDOPSIS THALIANA GAMMA-TUBULIN COMPLEX PROTEIN 2, gamma-tubulin complex protein 2 (.1) Potri.014G094900 [exp] 97 / 7e-26 AT3G61650 960 / 0.0 gamma-tubulin (.1) Potri.001G106100 [exp] 55 / 8e-11 AT5G23860 858 / 0.0 tubulin beta 8 (.1.2) Potri.003G125400 [exp] 53 / 3e-10 AT5G23860 857 / 0.0 tubulin beta 8 (.1.2) Potri.002G021800 [exp] 53 / 5e-10 AT1G20010 838 / 0.0 tubulin beta-5 chain (.1) Potri.009G040200 [exp] 52 / 7e-10 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2) Potri.006G095000 [exp] 52 / 9e-10 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.011G162500 [exp] 52 / 9e-10 AT5G23860 847 / 0.0 tubulin beta 8 (.1.2) Potri.001G246900 [exp] 52 / 1e-09 AT5G62700 858 / 0.0 tubulin beta chain 3 (.1) Potri.001G464400 [exp] 52 / 1e-09 AT5G62700 850 / 0.0 tubulin beta chain 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [flax] [poplar] Tubulin PF00091 [flax] [poplar] Tubulin Tubulin/FtsZ family, GTPase domain
Representative CDS sequence Show only first row Show all	>Lus10010985 pacid=23148676 polypeptide=Lus10010985 locus=Lus10010985.g ID=Lus10010985.BGIv1.0 annot-version=v1.0 ATGCCGAGAGAAATCATCACTCTTCAAGTTGGGCAATGCGGGAACCAGATTGGCATGGAGTTCTGGAAGCAGCTATGCCTCGAACATGGCATCAGCAAAG ACGGCATTCTCGAGGATTTCGCTACCCAGATTGCGAAGTTAGCTGTAGTTGGAAATGTGATCTTACTTACACTGTGA
AA sequence Show only first row Show all	>Lus10010985 pacid=23148676 polypeptide=Lus10010985 locus=Lus10010985.g ID=Lus10010985.BGIv1.0 annot-version=v1.0 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQIAKLAVVGNVILLTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	0	1
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10011660 [exp]	1.7	0.8314
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	5.5	0.8017
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	7.5	0.7869
AT2G15730			P-loop containing nucleoside t...		Lus10042667 [exp]	8.5	0.7496
AT4G37810			unknown protein		Lus10011570 [exp]	14.7	0.7560
					Lus10037800 [exp]	16.1	0.6912
AT2G33320			Calcium-dependent lipid-bindin...		Lus10003570 [exp]	21.8	0.6546
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10017007 [exp]	22.4	0.6770
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10011487 [exp]	23.4	0.7270
AT1G18090			5'-3' exonuclease family prote...		Lus10038958 [exp]	23.9	0.7307

Compare expression of checked genes

Lus10010985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.