Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61650 850 / 0 TUBG1 gamma-tubulin (.1) AT5G05620 841 / 0 TUBG2 ,ATGCP2 GAMMA-TUBULIN 2, ARABIDOPSIS THALIANA GAMMA-TUBULIN COMPLEX PROTEIN 2, gamma-tubulin complex protein 2 (.1) AT5G44340 237 / 1e-73 TUB4 tubulin beta chain 4 (.1) AT4G20890 235 / 8e-73 TUB9 tubulin beta-9 chain (.1) AT2G29550 234 / 2e-72 TUB7 tubulin beta-7 chain (.1) AT1G75780 231 / 3e-71 TUB1 tubulin beta-1 chain (.1) AT5G23860 231 / 3e-71 TUB8, b-TUB tubulin beta 8 (.1.2) AT5G62690 230 / 7e-71 TUB2 tubulin beta chain 2 (.1) AT5G62700 230 / 7e-71 atgcp3, TUB3 tubulin beta chain 3 (.1) AT1G20010 230 / 7e-71 TUB5 tubulin beta-5 chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007851 [exp] 891 / 0 AT3G61650 938 / 0.0 gamma-tubulin (.1) Lus10002000 [exp] 237 / 2e-73 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10035497 [exp] 237 / 2e-73 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10008528 [exp] 235 / 1e-72 AT5G12250 837 / 0.0 beta-6 tubulin (.1) Lus10016448 [exp] 231 / 3e-71 AT5G23860 921 / 0.0 tubulin beta 8 (.1.2) Lus10040712 [exp] 231 / 3e-71 AT5G23860 923 / 0.0 tubulin beta 8 (.1.2) Lus10039231 [exp] 231 / 4e-71 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10027476 [exp] 231 / 4e-71 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10038458 [exp] 231 / 5e-71 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G094900 [exp] 846 / 0 AT3G61650 960 / 0.0 gamma-tubulin (.1) Potri.002G167800 [exp] 841 / 0 AT5G05620 958 / 0.0 GAMMA-TUBULIN 2, ARABIDOPSIS THALIANA GAMMA-TUBULIN COMPLEX PROTEIN 2, gamma-tubulin complex protein 2 (.1) Potri.003G126800 [exp] 236 / 3e-73 AT5G12250 815 / 0.0 beta-6 tubulin (.1) Potri.001G104600 [exp] 233 / 6e-72 AT5G12250 831 / 0.0 beta-6 tubulin (.1) Potri.016G107300 [exp] 232 / 2e-71 AT5G23860 843 / 0.0 tubulin beta 8 (.1.2) Potri.001G464400 [exp] 231 / 2e-71 AT5G62700 850 / 0.0 tubulin beta chain 3 (.1) Potri.006G095000 [exp] 231 / 3e-71 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.009G040200 [exp] 231 / 3e-71 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2) Potri.011G162500 [exp] 231 / 5e-71 AT5G23860 847 / 0.0 tubulin beta 8 (.1.2) Potri.001G246900 [exp] 230 / 9e-71 AT5G62700 858 / 0.0 tubulin beta chain 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0442 [flax] [poplar] Tubulin_C PF03953 [flax] [poplar] Tubulin_C Tubulin C-terminal domain CL0566 [flax] [poplar] Tubulin PF00091 [flax] [poplar] Tubulin Tubulin/FtsZ family, GTPase domain
Representative CDS sequence Show only first row Show all	>Lus10010986 pacid=23148657 polypeptide=Lus10010986 locus=Lus10010986.g ID=Lus10010986.BGIv1.0 annot-version=v1.0 ATGCAGGGAGGGGACAGGAAAGACGTGTTCTTTTACCAAGCGGACGACCAGCATTACATACCGCGAGCTTTGCTGATAGATTTGGAGCCGAGGGTGATTA ACGGTATCCAGAATGGCGATTACAGGAATCTCTCCAACCATGAGAACATCTTTGTTGCTGATCATGGTGGTGGTGCTGGAAACAACTGGGCTAGTGGATA TCATCAGGGTCAGGGAGTTGAGGAGGATATAATGGACATGATAGATAGAGAAGCTGATGGAAGTGATAGTCTTGAAGGTTTCGTCCTTTGCCATTCAATT GCCGGAGGAACCGGCTCAGGTATGGGTTCATACCTCCTGGAGACTCTGAACGACCGTTACAGCAAGAAACTGATTCAAACCTACAGTGTATTCCCTAACC AGATGGAGACAAGTGATGTGGTTGTCCAACCTTACAACTCTCTACTAACACTCAAGAGATTGGCACTTAATGCTGACTGTGTAGTTGTTCTTGATAACAC TGCGCTCAATCGAATTGCAGTGGAGCGCCTCCATTTGTCGAATCCTACTTTTGCTCAGACCAACTCTTTGGTGTCCACTGTGATGTCTGCCAGCACAACA ACGTTGCGGTATCCTGGCTATATGAACAATGACTTGGTTGGGCTTCTTGCTTCTCTGATTCCGACTCCGAGGTGCCATTTTCTCATGACGGGGTATACAC CGCTTACTGTGGAAAGACAGGCTAATGTAATCCGGAAAACGACTGTACTTGACGTTATGAGAAGGCTTCTACAGACAAAGAACATCATGGTTTCTTCATA TGCGAAGACAAAGGAAGCAAGTCGAGCCAAGTACATCTCGATATTAAACATCATCCAAGGGGAAGTAGACCCTACTCAGGTTCATGAAAGTCTGCAAAGG ATTCGTGAACGGAAGCTCGTTAATTTTATCGAATGGGGTCCTGCAAGTATACAGGTTGCTCTGTCAAGGAAGTCTCCATATGTCCAGACTGCACATAGGG TCAGTGGTCTCATGTTGGCGAGCCATACTAGCATCCGGCACCTCTTTGACAAGGTCATGCACCAATATGACAAGTTGAGAGGGAAGCAAGCCTTTCTAGA CAACTATCGTAAATTCCCAATGTTTGCTGACAATGACCTTTCCGAGTTCGACGAATCAAGGGATGTAGTCAAGAGCTTGGCTGATGAATATCAAGCTTGT GAATCTGCAGACTACATCAAGTGGGGAATGGAGGATCCTGATCACCTTATGACCGGTGAAGGCAACGCTTCAGGGTCAGTGGATCCATAA
AA sequence Show only first row Show all	>Lus10010986 pacid=23148657 polypeptide=Lus10010986 locus=Lus10010986.g ID=Lus10010986.BGIv1.0 annot-version=v1.0 MQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLSNHENIFVADHGGGAGNNWASGYHQGQGVEEDIMDMIDREADGSDSLEGFVLCHSI AGGTGSGMGSYLLETLNDRYSKKLIQTYSVFPNQMETSDVVVQPYNSLLTLKRLALNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTT TLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYAKTKEASRAKYISILNIIQGEVDPTQVHESLQR IRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFDKVMHQYDKLRGKQAFLDNYRKFPMFADNDLSEFDESRDVVKSLADEYQAC ESADYIKWGMEDPDHLMTGEGNASGSVDP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010986 [exp]	0	1
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Lus10013998 [exp]	2.0	0.8823
AT4G15640			unknown protein		Lus10033970 [exp]	5.7	0.8996
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10012813 [exp]	6.3	0.8687
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10002430 [exp]	6.8	0.8909
AT1G10780			F-box/RNI-like superfamily pro...		Lus10022971 [exp]	7.9	0.8798
AT2G14050		MCM9	minichromosome maintenance 9 (...		Lus10023780 [exp]	9.3	0.8836
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10007851 [exp]	11.5	0.8574
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002901 [exp]	12.5	0.8816
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10005615 [exp]	14.1	0.8761
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10023341 [exp]	14.4	0.8761

Compare expression of checked genes

Lus10010986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.