Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16990 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) AT5G17000 476 / 7e-170 Zinc-binding dehydrogenase family protein (.1) AT5G16970 476 / 1e-169 AT-AER alkenal reductase (.1) AT5G16960 475 / 3e-169 Zinc-binding dehydrogenase family protein (.1) AT3G03080 470 / 2e-167 Zinc-binding dehydrogenase family protein (.1) AT5G37980 464 / 5e-165 Zinc-binding dehydrogenase family protein (.1) AT1G26320 459 / 8e-163 Zinc-binding dehydrogenase family protein (.1.2) AT5G37940 457 / 4e-162 Zinc-binding dehydrogenase family protein (.1) AT5G38000 453 / 2e-160 Zinc-binding dehydrogenase family protein (.1) AT3G59845 422 / 2e-148 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010989 [exp] 655 / 0 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 633 / 0 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 604 / 0 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 538 / 0 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 536 / 0 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 512 / 0 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 466 / 7e-166 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 380 / 4e-130 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1) Lus10003638 [exp] 353 / 2e-122 AT3G03080 356 / 8e-124 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G143700 [exp] 504 / 0 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.007G143800 [exp] 501 / 2e-179 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G142400 [exp] 490 / 2e-175 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.017G006000 [exp] 476 / 1e-169 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.017G002700 [exp] 474 / 4e-169 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G005700 [exp] 476 / 5e-169 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143600 [exp] 474 / 7e-169 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G002300 [exp] 470 / 2e-167 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G005400 [exp] 469 / 1e-166 AT5G37980 488 / 3e-174 Zinc-binding dehydrogenase family protein (.1) Potri.017G002500 [exp] 427 / 4e-150 AT3G03080 433 / 1e-152 Zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10010988 pacid=23148639 polypeptide=Lus10010988 locus=Lus10010988.g ID=Lus10010988.BGIv1.0 annot-version=v1.0 ATGGCGCCGGAGCTGAAGAACAACAAGCAAGTGGTGCTGAAGGAGCACGTCGCCGGCGGATACCCGAACGAATCGCATTTCGCGGTGAAGATCGCCGATG TTAAGCTTGAAGTTCCGGAAGGTTCGAAGACCGCGATCGTACTGGAGAACCTCTACCTGTCTTGTGATCCGTACATGCGTGGCAAGATGTCGTACCGCGA GACCGCCGATCCTGAATTCGCTTCCTTCACCCCTGGCTCCCCGATTTCAGGGTTTGGAGTGAGCAAAGTGGTGGAATCAGGGCACCCAGGTTACAAGAAG GGAGATTTGGTATGGGGGTTCACTAACTGGGAAGAGTACAGCATCATTGAGAACCCTAAAGTCATTTTCAAAATTCCCAATTCCGACGTCCCACTTTCCT ACTACACTGGCCTCCTCGGAATGCCTGGAATGACTGCTTATTTTGGATTCCACGACGTCTGCACTCCAAAGAAAGGCGAGTATGTGTTCGTCTCAGCAGC TTCTGGCGCAGTTGGCCAGCTGGTTGGGCAGTTCGCTAAGTTGGCTGGTTGCTATGTTGTTGGAAGTGCTGGAACCAAAGAAAAGGTTGATTTGCTGAAG AACAAGTTCGGATTTGATGAGGCTTTCAACTACAAGGAAGAGACTGACTTGGATGCTGCATTGAAGAGGTACTTCCCCAAGGGCATCGACATCTACTTTG AGAACGTTGGTGGGAAGACCCTCGACGCGGTGCTACTAAACATGAGGCCCCACGGCCGAATCGCAGCGTGCGGGATGATATCCCAGTACAACCTGGAGAA GCCTGAAGGAGTCCACAACCTGACGGCCATAGTGTACAAGCGCGTCAAAATTCAAGGGTTCGTCGTGTTCGACTACTTCCATCGATACGCCGAGTTCTTG GGCGTGGTGCTGCCTTACATCAAGGAACGGAAGATTAACTACGTCGAGGACGTGAGCCATGGGCTCGAGAGCGGGCCCGGTGCTCTCGTGGGGCTCTTCA GTGGCCGCAACGTCGGGAAGCAAGTTGTGGCCGTGGCTAAAGAGTGA
AA sequence Show only first row Show all	>Lus10010988 pacid=23148639 polypeptide=Lus10010988 locus=Lus10010988.g ID=Lus10010988.BGIv1.0 annot-version=v1.0 MAPELKNNKQVVLKEHVAGGYPNESHFAVKIADVKLEVPEGSKTAIVLENLYLSCDPYMRGKMSYRETADPEFASFTPGSPISGFGVSKVVESGHPGYKK GDLVWGFTNWEEYSIIENPKVIFKIPNSDVPLSYYTGLLGMPGMTAYFGFHDVCTPKKGEYVFVSAASGAVGQLVGQFAKLAGCYVVGSAGTKEKVDLLK NKFGFDEAFNYKEETDLDAALKRYFPKGIDIYFENVGGKTLDAVLLNMRPHGRIAACGMISQYNLEKPEGVHNLTAIVYKRVKIQGFVVFDYFHRYAEFL GVVLPYIKERKINYVEDVSHGLESGPGALVGLFSGRNVGKQVVAVAKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10010988 [exp]	0	1
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10014710 [exp]	1.7	0.9151
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10036172 [exp]	3.5	0.9080
AT4G03320		AtTic20-IV, TIC...	translocon at the inner envelo...		Lus10039783 [exp]	3.7	0.9143
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	4.5	0.9028
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10011006 [exp]	5.0	0.8897
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031196 [exp]	11.2	0.8851
AT1G26800			RING/U-box superfamily protein...		Lus10012819 [exp]	14.0	0.8449
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	14.3	0.8621
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10037333 [exp]	15.3	0.8280
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	24.4	0.8509

Compare expression of checked genes

Lus10010988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.