Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) AT5G16970 474 / 3e-169 AT-AER alkenal reductase (.1) AT5G17000 474 / 8e-169 Zinc-binding dehydrogenase family protein (.1) AT3G03080 471 / 1e-167 Zinc-binding dehydrogenase family protein (.1) AT5G16960 470 / 3e-167 Zinc-binding dehydrogenase family protein (.1) AT5G37980 461 / 8e-164 Zinc-binding dehydrogenase family protein (.1) AT5G37940 455 / 3e-161 Zinc-binding dehydrogenase family protein (.1) AT1G26320 454 / 4e-161 Zinc-binding dehydrogenase family protein (.1.2) AT5G38000 449 / 3e-159 Zinc-binding dehydrogenase family protein (.1) AT3G59845 416 / 3e-146 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007853 [exp] 673 / 0 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 655 / 0 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 607 / 0 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 538 / 0 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 536 / 0 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 506 / 0 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 451 / 9e-160 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 376 / 1e-128 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1) Lus10003638 [exp] 347 / 4e-120 AT3G03080 356 / 8e-124 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G143700 [exp] 503 / 2e-180 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.007G143800 [exp] 490 / 3e-175 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G142400 [exp] 488 / 2e-174 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.017G002700 [exp] 480 / 3e-171 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G005700 [exp] 478 / 1e-169 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G006000 [exp] 476 / 2e-169 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.017G002300 [exp] 475 / 3e-169 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G005400 [exp] 471 / 2e-167 AT5G37980 488 / 3e-174 Zinc-binding dehydrogenase family protein (.1) Potri.007G143600 [exp] 470 / 2e-167 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G002950 [exp] 423 / 1e-148 AT5G16970 464 / 7e-165 alkenal reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10010989 pacid=23148644 polypeptide=Lus10010989 locus=Lus10010989.g ID=Lus10010989.BGIv1.0 annot-version=v1.0 ATGGCGCCGGAGCAGAGGAGCAACAAGCAGGTAGTGCTGAAGGAGAACGTCCACGGCGGCTACCTCAACGAGTCACATTTCGCTGTGAAGACCGCCGAGG TGAAGCTTGAAGTTCCGGAAGGTTCGAAGACCGCGATCGTGCTGAAGAACCTCTACCTGTCTTGTGATCCGTACATGCGTGGCAGGATGTCGTACGGCCA GACCGTCGATCCTGAGTTCGCCGCCTACACCCCTGGCTCCCCAATTTCTGGGTTCGGAGTGAGCAAAGTGGTGGAATCAGGGCACCCAGATTACAAGAAG GGAGACTTGGTATGGGGGTTCACTAACTGGGAAGAGTACAGCATCATTGAGAACCCTAAAGTCCTTTTCAAAATTCCCAGTAATTCAGACGTCCCACTTT CCTACTACACTGGCCTCCTGGGAATGGCTGGAATGACTGCTTATTTTGGCTTCCACGACGTCTGCACTCCGAAGAAAGGCGAGTATGTGTTCGTCTCAGC AGCATCTGGCGCGGTTGGCCAGCTGGTCGGGCAGTACGCTAAGTTGGCTGGCTGCTACGTTGTTGGAAGTGCTGGAACCAAAGAAAAGGTTGATTTGCTG AAGAACAAGTTTGGATTTGATGAGGCTTTCAACTACAAGGAAGAGACTGACTTGGATGCTGCATTAAAGAGGTACTTCCCTGAGGGCATCGACATCTACT TCGAAAACGTCGGGGGGAAGACCCTTGACGCGGTGCTACTGAACATGAGGCCCCATGGCCGAATAGCAGCGTGTGGGATGATATCCCAGTACAACCTGGA GAAATCCGAAGGAGTCCACAACCTGATGACCATAGTGTACAAGCGCGTCAAGATTCAAGGGTTCATCGTGTTGGACTACTTCCATCGATACGCTGAGTTC TTGGGCGTGGTGCTGCCCTACATCAAGGAAGGAAAGATCAACTACGTCGAGGACGTGAGCCAAGGGCTCGAGAGCGGGCCCGGTGCTCTCGTGGGGCTCT TTAGCGGCCGCAACGTCGGGAAACAAGTTGTGGCCGTGGCTAAGGAGTGA
AA sequence Show only first row Show all	>Lus10010989 pacid=23148644 polypeptide=Lus10010989 locus=Lus10010989.g ID=Lus10010989.BGIv1.0 annot-version=v1.0 MAPEQRSNKQVVLKENVHGGYLNESHFAVKTAEVKLEVPEGSKTAIVLKNLYLSCDPYMRGRMSYGQTVDPEFAAYTPGSPISGFGVSKVVESGHPDYKK GDLVWGFTNWEEYSIIENPKVLFKIPSNSDVPLSYYTGLLGMAGMTAYFGFHDVCTPKKGEYVFVSAASGAVGQLVGQYAKLAGCYVVGSAGTKEKVDLL KNKFGFDEAFNYKEETDLDAALKRYFPEGIDIYFENVGGKTLDAVLLNMRPHGRIAACGMISQYNLEKSEGVHNLMTIVYKRVKIQGFIVLDYFHRYAEF LGVVLPYIKEGKINYVEDVSQGLESGPGALVGLFSGRNVGKQVVAVAKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10010989 [exp]	0	1
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10030468 [exp]	1.0	0.8636
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10012823 [exp]	31.6	0.7725
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10019186 [exp]	40.6	0.7533
AT1G80930			MIF4G domain-containing protei...		Lus10002210 [exp]	40.6	0.8117
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10024044 [exp]	49.8	0.8043
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10020987 [exp]	50.6	0.8051
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10023882 [exp]	64.2	0.7971
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10035921 [exp]	64.5	0.8123
AT1G47530			MATE efflux family protein (.1...		Lus10002367 [exp]	65.0	0.7877
					Lus10011947 [exp]	78.0	0.7764

Compare expression of checked genes

Lus10010989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.