Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39810 845 / 0 HOS1 HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, ubiquitin-protein ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007854 [exp] 1013 / 0 AT2G39810 652 / 0.0 HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, ubiquitin-protein ligases (.1) Lus10000423 [exp] 249 / 1e-68 AT1G27180 338 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G155200 [exp] 986 / 0 AT2G39810 961 / 0.0 HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, ubiquitin-protein ligases (.1) Potri.003G079700 [exp] 977 / 0 AT2G39810 928 / 0.0 HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, ubiquitin-protein ligases (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010990 pacid=23148685 polypeptide=Lus10010990 locus=Lus10010990.g ID=Lus10010990.BGIv1.0 annot-version=v1.0 ATGGAAAGGAGTCCAGTCAACAGTCGCGTTTCTCCTTCTACTTCTGCCGGCGGCGGCGGCGGCGGGGGCTCTGGCTTCCGTAACGCCGCGCTGTTGAGAT CCGCCGCTTCGAATCTCCAGCCCAACTACAGTAGCCTTGCTGTTCAAAAAGCGTTGGAACATCTGGCATCAATTGATTTGATTGAGCTGTGCAGTGAAGC CAAAGTAGAACGCTGTAGGGCGACCAGAGATTTGAGAAGCTGTGGACGCTATGTACAGCATGTCTTAGACTCATGTGGACATGCATCCTTATGCAAAGAG TGTAGTCAAAGGTGTGACTCCTGCCCAATTTGTAGAATTCCCATCCCCAAGAATGGCAATAGGCTTCGACCTCGCCTTTACTGTGAGTGTATAGAGGCTG GCTTGATCTCCAAAAGATGTGATGAAAGATTTCAAGAGAAAGAAGACAGCGATGATCAATTGACTGCAGATGTGCTGCGACTCTATGCTCTGTTTGATGT TGCTATGGAGAATAACCTGGTCTCTTTGATTTGCCACTTGTCTAGTGATCCAGTCATAGCTTTCTTGTTGGATGAAGTAGTCGTGAAAGACTGGTGCAAA AGGACATTCAAGAATACGATTGAAGAGCTTGTGTCGATATATAATGATGGCACAAAAGAAATGGGTAAAAGAATAAGTGTGCTTCTCAAGGTTTCAAACC ATCTGGGTGGAATATCCAATGTGCTTGAAGTTCTGGAGTCTTCATTTAGGGGAAGCTCTTCCGCACAGGTCAATGACTTGCAGTTTCTCCATGAAAGTGT TCTGAAAGCGAAACAGCATGCAGACATTATGGCCTGGTGTATACGCAATGAATTTCTGGAAAATTTGAGACCCCGATATGGTACTTTAGCCCCGTGGCGC TCTGTTGTCCGGGCACGGAAGGCCGCTGCAGTTAAACGTTCATGGCCAGATGTGGTGAATCAGTCTGCGGGATCAAATATGCAGGCAGGCTCACTCTTCA TTGAAGATGCCTTATCAAATCTAGAAATAGAGCTCGGCCATCAACAGGTCATGGAGGCAGAATTTGGACTTGCATCATTACAGAAGGATAGAGATTCACT TTTCAGGTCTAAACTAGAGGGCCTTGCAGGATGCTACCCTTTTGAATGCCTTCGAGTGGCTGTTGACACGCTCTTCTTAACTGGAAGCTATGACATGGTT GTTGCAAAGCAGGCCATTTTTCTCTACTACATTTTTGACAGGCATTGGACAACGCCAGATGACAGTTGGAGAAGCATCGTAGATGACTTTGCAGCTACAT TTGGAGTAACTAGACATTCCCTGATAGAATCTCTAACCTTCTATCTTCTAGACGATGACACTGATGAGGCTCTAAAGGAGGCTTGTAACCTTCTGCCAGA AATCTGTGGCGCATCAACTCATCCAAAGATTGCTCAAGTATTGCTGGAGCGAGGCATGCCAGAAACAGCTTTAATGGTGCTGCGGTGGTCTGGGCACGAT GGTTCACAATTGGTGTCACTTAGCGAGGCTGTTACTGCAGTCCGAGTCAGGGTGGAATGCGGACTTCTAACTGAAGCTTTCATGTATCAGAGAAATGTAT GGACCAAAGTTAAGGAGAAGAACTCAAAGGGAGGACAGCCAAAGGACGACTTGAGTGGATGGGGGGAATGGTTGGCGACTTTGGTGTCAGAAATATCCTG TCTTTGTATCAAAAGAAACTTGGTGGATCGGATGATCGAATTGCCCTGGGATTCTGCCGAGGAGAAGTATCTTTCTAAGTGTCTCCTTGACTGTGCGGTT CACGATCCTTCATCGACGACTGGAAGTCTTCTTGCAGTATACTATCTTCAGCGATATCGTTACACTGAGGCATATGAAGTCGATGTCAAGCTTCAGACCG TGGAGCAAGATTTTATCTTGAAGAATTCGATGAATGAAGCAGTTGTATCTAGAATGAGATCAGCAAGTCATTGGAGGGCAGCACTTGTTGGGAAATCCAA ACAGCTGCTATCACCAATTGAGCAGCAACTACACAAGGAAAGAATTCTTAGTCGTAACGCTCTTGTTCAAGAGGCTGAGATGCCAAGAACGTCCGGTGAA GAACACGACCTGACTTCAGTCAGTTTCGTGGTACCGCAGAACACAGCTTCTTCTGTAGTCCTGCAGCCAGGATTTGCAAATCCATTCAAGTCTACTGTCC TTCGCGAAACATCGTCTGACAATTCCGAATTACAGAATCAAGTTAACAGCCTGAGCAGGAATCTGAAATTCGACGACGTCGCGACACCTTTGCATCGTCG TGCCAGTCCTACTACTCCTGCTAAGGAGACCAACAGATCGTCAAACCGATACTTGCATCATTACCAGCAGGATAGTTACTCTAAAATGGAAGAGAACGGA TTCCTCAGCAGCAACCGATCAAACGGGACCCCTCTGTTCTCCGGCAATGCTATGTCGAAACAGACATTGGGTTCGACCAAGAAGCATGGTTTTGATGACC CTATGGACCTAGCATGGAGCGGTGGGGAGAAGGCTACTGTCCTTGAAGATAGAAGCATGAATGGAGGACAGAGATGGAGGTCAGACGAAGCCAGCGACGA CGAGGAGCAGACTCCGGCAAGATCTGCCGGTGGATCTGCGGTCCATGGGAGGGGACTGAGGAGAGTTAGGGCTGCTAGAAGATGA
AA sequence Show only first row Show all	>Lus10010990 pacid=23148685 polypeptide=Lus10010990 locus=Lus10010990.g ID=Lus10010990.BGIv1.0 annot-version=v1.0 MERSPVNSRVSPSTSAGGGGGGGSGFRNAALLRSAASNLQPNYSSLAVQKALEHLASIDLIELCSEAKVERCRATRDLRSCGRYVQHVLDSCGHASLCKE CSQRCDSCPICRIPIPKNGNRLRPRLYCECIEAGLISKRCDERFQEKEDSDDQLTADVLRLYALFDVAMENNLVSLICHLSSDPVIAFLLDEVVVKDWCK RTFKNTIEELVSIYNDGTKEMGKRISVLLKVSNHLGGISNVLEVLESSFRGSSSAQVNDLQFLHESVLKAKQHADIMAWCIRNEFLENLRPRYGTLAPWR SVVRARKAAAVKRSWPDVVNQSAGSNMQAGSLFIEDALSNLEIELGHQQVMEAEFGLASLQKDRDSLFRSKLEGLAGCYPFECLRVAVDTLFLTGSYDMV VAKQAIFLYYIFDRHWTTPDDSWRSIVDDFAATFGVTRHSLIESLTFYLLDDDTDEALKEACNLLPEICGASTHPKIAQVLLERGMPETALMVLRWSGHD GSQLVSLSEAVTAVRVRVECGLLTEAFMYQRNVWTKVKEKNSKGGQPKDDLSGWGEWLATLVSEISCLCIKRNLVDRMIELPWDSAEEKYLSKCLLDCAV HDPSSTTGSLLAVYYLQRYRYTEAYEVDVKLQTVEQDFILKNSMNEAVVSRMRSASHWRAALVGKSKQLLSPIEQQLHKERILSRNALVQEAEMPRTSGE EHDLTSVSFVVPQNTASSVVLQPGFANPFKSTVLRETSSDNSELQNQVNSLSRNLKFDDVATPLHRRASPTTPAKETNRSSNRYLHHYQQDSYSKMEENG FLSSNRSNGTPLFSGNAMSKQTLGSTKKHGFDDPMDLAWSGGEKATVLEDRSMNGGQRWRSDEASDDEEQTPARSAGGSAVHGRGLRRVRAARR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10010990 [exp]	0	1
AT5G06590			unknown protein		Lus10021091 [exp]	3.0	0.9200
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	3.3	0.9399
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10043175 [exp]	3.9	0.9263
AT4G12540			unknown protein		Lus10025820 [exp]	4.2	0.9233
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	4.2	0.9362
AT1G29370			Kinase-related protein of unkn...		Lus10004604 [exp]	4.5	0.9128
AT2G40770			zinc ion binding;DNA binding;h...		Lus10012867 [exp]	8.7	0.9319
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	9.6	0.9335
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	9.9	0.9176
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10009236 [exp]	10.2	0.9025

Compare expression of checked genes

Lus10010990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.