Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08840 1344 / 0 EMB2411 embryo defective 2411, DNA replication helicase, putative (.1.2) AT2G03270 162 / 4e-41 DNA-binding protein, putative (.1) AT5G35970 136 / 3e-32 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G05460 123 / 5e-28 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47010 117 / 5e-26 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT4G15570 101 / 2e-21 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 87 / 6e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 84 / 5e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 82 / 2e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05540 81 / 4e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026309 [exp] 164 / 9e-42 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10042360 [exp] 140 / 2e-34 AT2G03270 613 / 0.0 DNA-binding protein, putative (.1) Lus10024974 [exp] 135 / 8e-33 AT5G35970 825 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024527 [exp] 131 / 2e-30 AT5G35970 1343 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003024 [exp] 121 / 2e-27 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10011054 [exp] 120 / 6e-27 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10035774 [exp] 100 / 4e-21 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035775 [exp] 97 / 5e-20 AT5G37150 561 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037353 [exp] 97 / 6e-20 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G180200 [exp] 1546 / 0 AT1G08840 1528 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Potri.006G054600 [exp] 166 / 1e-42 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.013G073900 [exp] 141 / 1e-33 AT5G35970 1414 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G047500 [exp] 132 / 4e-31 AT1G05460 1051 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G148100 [exp] 120 / 4e-27 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.003G086400 [exp] 118 / 2e-26 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.008G155400 [exp] 107 / 3e-23 AT1G05460 1127 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G056700 [exp] 101 / 1e-21 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G253700 [exp] 97 / 6e-20 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077500 [exp] 93 / 8e-19 AT1G65810 827 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [flax] [poplar] PDDEXK PF01930 [flax] [poplar] Cas_Cas4 Domain of unknown function DUF83 CL0236 [flax] [poplar] PDDEXK PF08696 [flax] [poplar] Dna2 DNA replication factor Dna2
Representative CDS sequence Show only first row Show all	>Lus10010991 pacid=23148695 polypeptide=Lus10010991 locus=Lus10010991.g ID=Lus10010991.BGIv1.0 annot-version=v1.0 ATGCCGCCGAGGAAGAAGCTCAAGCCATCGTCAGCAGCTGCTTCGAAGAAGAAATCGGAAAACTCGTCTCCCTCCCCCGCCACCGCCGATCAACACAACC CTCGCCCGTCTCAGAACCAGCCTTCCAAGTTCGGGATCCAGCATTTCTTCAACCGGCACAACAGCCAGATTCAGAACAGCAATGATACTCCCGCTTCTTC GAATCCAGCTCATCCTCCTGCGCCGCAGAAGAAGCAGCAGCCTACGTCTGCTAAGCTTGCTGTTGTTCGGGCTTCAAACCCTAATTTTGCTTCTACTGCT GCTCAGGTAGTCTCTTCTCCGCCTCCAGAAGTATCCTTACGACCTAATCCCGGTGGAAATGGTGACGGAAGTCCTGGATCGTTTGTTTCTCCTGTCAATG GAGCTTCCTCCTCAAAGTCGCTCTCGCGGCACCGATTCGGTGTCTCGCCTCGGCTGCTCATTAAGCAGAGCCAGGACGATGGAGCTGATGAGGTAACGTG GAAGATATCTCCGGTGAACGAAAGGCTTCAAGCTGTTTCCAAGCATTCGGGTGAGACAATTAAAACATTGGCCGAATCATCAAGGCTTTCTTCCTTCGCC ATTCATCATTGTACAGAAGAGAAGGAGTCTCCTGCTACTTCTGGCAAGTTTCTCAAGCCTCATTCTACATTGGTTCACAAGCCAATTGATGTATCTGCAA TCAGGGATACTAAAGCTGGATTCAAAAGGGTGGAAGCATCTCCGGATATAGTAGTCGAAGGGGGTGGTTCAGCATCTAGCCAACCTAGTCCGTTCAGGAC TCCACCATCGCTAACCTGTCATCAGGACAAGATAGCCAATATTTTTGCTGGAGCATCTGATCAGCTAAGTCTTGGGCATCACAAAAAGGCATTGATTGAA CTTTTAGATCAAGTTGAGGATGCAATTTCTATTGAGGACTTGATGAATGGTGGTTGTAATGACTGTTCATCCAAAGTTCAAGAAAAAGTTTCTCAGCAGG CGACCTTCAATTCTGGCCCTAAAAGAACATCTGAACGGGTCGACAAGTCATCTTCAAGTAGCAAGTTTCTTGTATTGGAGGTATGTGAAAAGCATGGCCG TAGTGATACATTGGAAGTTGAGCGTCCATATAAGGTCCTTCGCTTGCTTAATGAGCAAACAGGAGAAGAGCAGGCAGTCTCCCTGTGGGATGAATGGTTT TACAGCGTTGTTGCTCCTGGAGACACTGTTAATGTAATCGGTGAATTTGACCAGTCCAGGATGTGCAATGTGGACAAGAACCATAATTTGTTAGTTGTTC ACCCAGACGTTTTGGTCTCTGGAACTCGGGTTTCTGGAAGCTTCGATTGCCCCAGGCGAGCTGTACTTGATGAGAGACTAAAAAGCTTTGAGCATTCTGC TGCAGCATTAATTGGTACATTGCTGCACCAGATTTTTCAGGATGCTTTGGTAAAGGAGAATCCTGATACTGACTTCTTGAAAGGGTATGCCAAAGTAGTC ATGCAGAAAAATATTGAGAGTTTGTATGCATGTGGAGTCAACGAAAATGGTGTGCTGAAGACCTTGGTTGGATCCATACCAAAACTAGTTAATTGGATTG CTCGGTTCAGAAATTCAAAGGATCCGCAGATGCCAATTGTTGAAATTGGCTCCAAAGAAGAATTCAAGAGACTAAGAGTATCGGAGGTTGTTGACATTGA GGAGATGGCTGTGTCCACAAAATATGGATTGAAAGGAAACATTGATGCTTCTCTTAGAGTAATTGTTGAGTCGAATGTAGAGGAAAGAGGTGAGAAGATC ATGCCACTAGAGTTTAAGACTGGGAAAGTACGAGATGGCCAGATATCCACAGAACACAGTGTCCAAGTAATCTTATACACTCTCCTTATGTCTGAAAGGT ACAGGGAACAGATTGATTCAGGGCTCTTGTATTACCTTCAGTCAGATCGTACACAGGGAATCAAAGTACAGAGATCTGATGTTACTGGAATAATAATGCG GCGCAATGAGCTTGCAAATGACATCCGTAAGGCATCAACTTCACAAGTGCTGCCTCCTATGTTGAAGAGCCCCTGGACATGCAAAAACTGCCGCCATCTC GATGTTTGTACAATCTATCATAAGGTGCATGGTGGCACCGTTGAGGACAGTGGACTTGGTGAACTTTATGAAGCAAATATTCGCCATCTAACAACTGCAC ATGCTAAATTCCTACGCCACTGGGATAGGTTAATTGACTTAGAAGCTAAAGAAACACAGACGGCAAAGAATGAAATCTGGCACACACATGGTACGAAGGG TGATTCTTCCACTAATCATCTTCCATATTTTGTACTTGATACAACAAATGAACTGCAACAACAGCCATCTGTAAACGACAAGGGATTCATTTATCGTTTT GTCTGCAAAAGTTTGTCCACGCAAGGCGCTGATCGGGAATCGCAAACTGGCCCCTCTGATCACATACTCAAGACTGGAGACTATGTGGTTCTCAGCACTG TATCCGACGAGCAAATCATCTCGAGAGGAGTTGTAGCTGACGTTGATCGCTCCCAAGTTTCAGTCTCTGTTACCAAGCGCTTAAGACTTCCTCGCAGTAC TTCCTCCGGTTCAGATGATCTTCTCCATGAAATCTGGCATATTAACAAAGATGAATTCATGACTTCGTTTTCAGTCATGCGGTCCAATATTACATCACTC TTTTCGAGAAGGGAGCGTAGCTCTCACCTCCGCAGGATGATCGTGGACCTTGAGGCCCCTAGATTTGACAGTGGATGTGTATACAGCCAAGATCCAGCCA TTTCTTATATCTGGTCTGTTAAGACCTTGAACAGTGATCAGCGTCGAGCAATTCTTAAGATGCTTGCGGCTAAGGACTATGCCTTAGTATTAGGCATGCC TGGTACTGGCAAGACATCAACTGTGGTACATGCTGTGAAGGCCTTTTTGCTTAGAGGTTCATCCGTTTTGCTTACTTCTTATACGAACTCTGCACTCGAC AACTTATTAATCAAATTAAAAGCTCAGGGTATTGATTTCCTACGTATCGGAAGGCAAGGAGCTGTTCATGAGGAAATCCAGGACAGTTGCTGTGCAGGTA CACACCTGGAATCCATCAAGCAAAGACTAGACCAAGTTAGAGTTGTTGGTGTCACTTGTCTAGGAATCACTAGTCCTTTGCTCACCAGCAAGCATTTCGA CGTATGCATCATGGATGAAGCTGGACAGATCACTTTCCCGATTTCATTAGGGCCGTTGATGTTTAGTTCGATGTTCGTCCTTGTTGGCGATCACTATCAA TTACCCCCACTTGTTCAGAGCGCCGAGGCTCGAGAGAATGGAATGGGGATAAGTTTGTTCTGCAGACTCTGTGAAGCTCATCCTCAGGCCATTCTAGCCT TGCAGAGTCAGTATCGAATGTGCGAAGGAATTATGCAACTATCGAATGCCTTGATCTACGGTGATAGGCTGCAATGTGGCTCCTCCGAAGTAGCTAACAG AAAGCTTAAGGTTCCCAATCTCAAGTCTTGTTCATCATGGTTGCAAGAGGTCTTGAATCCAGACCGGGCAGTCGTTTTCATCAACACAGATATGCTACCC ACACTGGGATCAAACGATTCGAAATCGAAGAATCCAATCGAAGCTTACATACTCGCTGAGGTAGTGAAGATACTAACTAACAACGGGACTGAAGGCAAAG ACATTGGAATCATCACACCATACAATGCCCAGACAAATCTTCTTAAGACGGTCGTTCGTCCAGATTCTGTTGAAATACACACGATCGATAAGTATCAGGG TCGAGATAAGGAGTGCATAATGGTATCGTTTGTGAGGTCAGCGGAGAATCCCAGAAGTTACAGCTCTTCGCTTCTTGGTGACTGGCATCGCATCAATGTG GCAATCACTAGAGCCAAGATGAAGCTGATAATGGTGGGTTCGTGTAGAACCTTGTCTAAAGTGCCACTACTGAAGCTCTTGGTGGAGAAGGTTGCGGAGC AATCTGGTGTGTTGAAGTTGAGAAGCACTGACATCAACTTGCAGCAACTCAAAAGCTGGTATGAAGATCGTTAG
AA sequence Show only first row Show all	>Lus10010991 pacid=23148695 polypeptide=Lus10010991 locus=Lus10010991.g ID=Lus10010991.BGIv1.0 annot-version=v1.0 MPPRKKLKPSSAAASKKKSENSSPSPATADQHNPRPSQNQPSKFGIQHFFNRHNSQIQNSNDTPASSNPAHPPAPQKKQQPTSAKLAVVRASNPNFASTA AQVVSSPPPEVSLRPNPGGNGDGSPGSFVSPVNGASSSKSLSRHRFGVSPRLLIKQSQDDGADEVTWKISPVNERLQAVSKHSGETIKTLAESSRLSSFA IHHCTEEKESPATSGKFLKPHSTLVHKPIDVSAIRDTKAGFKRVEASPDIVVEGGGSASSQPSPFRTPPSLTCHQDKIANIFAGASDQLSLGHHKKALIE LLDQVEDAISIEDLMNGGCNDCSSKVQEKVSQQATFNSGPKRTSERVDKSSSSSKFLVLEVCEKHGRSDTLEVERPYKVLRLLNEQTGEEQAVSLWDEWF YSVVAPGDTVNVIGEFDQSRMCNVDKNHNLLVVHPDVLVSGTRVSGSFDCPRRAVLDERLKSFEHSAAALIGTLLHQIFQDALVKENPDTDFLKGYAKVV MQKNIESLYACGVNENGVLKTLVGSIPKLVNWIARFRNSKDPQMPIVEIGSKEEFKRLRVSEVVDIEEMAVSTKYGLKGNIDASLRVIVESNVEERGEKI MPLEFKTGKVRDGQISTEHSVQVILYTLLMSERYREQIDSGLLYYLQSDRTQGIKVQRSDVTGIIMRRNELANDIRKASTSQVLPPMLKSPWTCKNCRHL DVCTIYHKVHGGTVEDSGLGELYEANIRHLTTAHAKFLRHWDRLIDLEAKETQTAKNEIWHTHGTKGDSSTNHLPYFVLDTTNELQQQPSVNDKGFIYRF VCKSLSTQGADRESQTGPSDHILKTGDYVVLSTVSDEQIISRGVVADVDRSQVSVSVTKRLRLPRSTSSGSDDLLHEIWHINKDEFMTSFSVMRSNITSL FSRRERSSHLRRMIVDLEAPRFDSGCVYSQDPAISYIWSVKTLNSDQRRAILKMLAAKDYALVLGMPGTGKTSTVVHAVKAFLLRGSSVLLTSYTNSALD NLLIKLKAQGIDFLRIGRQGAVHEEIQDSCCAGTHLESIKQRLDQVRVVGVTCLGITSPLLTSKHFDVCIMDEAGQITFPISLGPLMFSSMFVLVGDHYQ LPPLVQSAEARENGMGISLFCRLCEAHPQAILALQSQYRMCEGIMQLSNALIYGDRLQCGSSEVANRKLKVPNLKSCSSWLQEVLNPDRAVVFINTDMLP TLGSNDSKSKNPIEAYILAEVVKILTNNGTEGKDIGIITPYNAQTNLLKTVVRPDSVEIHTIDKYQGRDKECIMVSFVRSAENPRSYSSSLLGDWHRINV AITRAKMKLIMVGSCRTLSKVPLLKLLVEKVAEQSGVLKLRSTDINLQQLKSWYEDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Lus10010991 [exp]	0	1
AT3G17030			Nucleic acid-binding proteins ...		Lus10016902 [exp]	2.0	0.8888
AT1G29630			5'-3' exonuclease family prote...		Lus10002782 [exp]	2.4	0.8788
					Lus10017515 [exp]	5.2	0.8873
AT2G37690			phosphoribosylaminoimidazole c...		Lus10005526 [exp]	6.0	0.8442
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	6.3	0.8388
AT3G05480		ATRAD9	cell cycle checkpoint control ...		Lus10020646 [exp]	6.3	0.8620
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10019443 [exp]	6.6	0.8853
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	9.8	0.8550
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10036982 [exp]	10.5	0.8881
AT1G67180			zinc finger (C3HC4-type RING f...		Lus10034088 [exp]	11.6	0.8790

Compare expression of checked genes

Lus10010991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.