Lus10010992 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60900 492 / 2e-163 RLK1 receptor-like protein kinase 1 (.1)
AT2G19130 278 / 2e-81 S-locus lectin protein kinase family protein (.1)
AT4G00340 274 / 5e-80 RLK4 receptor-like protein kinase 4 (.1)
AT5G24080 250 / 2e-74 Protein kinase superfamily protein (.1)
AT1G34300 258 / 3e-74 lectin protein kinase family protein (.1)
AT1G61610 246 / 9e-70 S-locus lectin protein kinase family protein (.1)
AT1G11330 242 / 2e-68 S-locus lectin protein kinase family protein (.1.2)
AT4G21390 242 / 3e-68 B120 S-locus lectin protein kinase family protein (.1)
AT1G11280 238 / 4e-67 S-locus lectin protein kinase family protein (.1.2.3.4)
AT4G32300 238 / 4e-67 SD2-5 S-domain-2 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004365 939 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1)
Lus10040160 618 / 0 AT5G60900 267 / 1e-88 receptor-like protein kinase 1 (.1)
Lus10031230 574 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1)
Lus10031231 563 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1)
Lus10031805 554 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1)
Lus10024195 545 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1)
Lus10036639 385 / 4e-121 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1)
Lus10042940 379 / 7e-119 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1)
Lus10030400 317 / 1e-99 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G153800 837 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T084500 643 / 0 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1)
Potri.003G212000 643 / 0 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T084300 634 / 0 AT5G60900 645 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T084401 632 / 0 AT5G60900 641 / 0.0 receptor-like protein kinase 1 (.1)
Potri.001G014600 627 / 0 AT5G60900 666 / 0.0 receptor-like protein kinase 1 (.1)
Potri.001G228200 626 / 0 AT5G60900 601 / 0.0 receptor-like protein kinase 1 (.1)
Potri.001G014100 619 / 0 AT5G60900 669 / 0.0 receptor-like protein kinase 1 (.1)
Potri.003G211800 586 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T084701 585 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00954 S_locus_glycop S-locus glycoprotein domain
CL0016 PKinase PF00069 Pkinase Protein kinase domain
CL0016 PF01453 B_lectin D-mannose binding lectin
Representative CDS sequence
>Lus10010992 pacid=23148683 polypeptide=Lus10010992 locus=Lus10010992.g ID=Lus10010992.BGIv1.0 annot-version=v1.0
ATGGCTTCTTCTCTTCTTCTTCTTATTCAGTTCATCTTGTTTCCTCTCCTCAATCTCCATTCCACCACTGCAAATGTGACCTTGAGTTCATCCCTCACAG
CCGGTTTCAACTCGGTCTGGGAATCGCCTTCTGGAAACTTTGCATTCGGGTTCAGCCAGCTCAACTCCAGCTCCAGCTTATTCCTACTATCAATCTGGTT
CAATAAGATCCCCAGCCGAACGATTGTCTGGTACGCGAATGGCGAAACCCCTGTTCCGAAAGGATCAAGGGTCATATTAACTTCATCCGGCCTTGCCTTG
ACCGATCCTGGAGGGAAACTTGTGTGGCAAGCAACATCGTCGTCGTCAAGCATTTTGTATGCTTCCATGTTGGATACCGGGAATTTTGTCCTTGTAAGTA
ACGGTTCTTCGAAAGATTATGTATGGGAAAGCTTCAGCAATCCTAGGGATACAATATTGCCGAATCAGACTGTCGATTCCGGAGCGGTTCTGTTCTCGAA
GCTAACCGAATCGAACTACTCGAGAGGGAGGTTCGCGCTTCGGTTCTCTAACGGCAGCCTTGACCTTCTTCCGGTCGCTTATCCGGATTTGAATTTTTCA
AATTCGAATTCAGATTCTTTTTATGAGAAGTATTACACGAGTGGTACGTACAGCTCGGACCCTTTGGAGACAGGGTCCGAACTGGTTTTCAACAGTTCAG
CTCAGATCTATGTGGTGAAAGTAAATGGTGACGTTTCTCGGCTTTCAAGCTGGGATTTCGTCGCTTATAGGGCGGATTTTTATTATCGGGCTACGCTCGA
TTTTGACGGAGTGTTCACTCAGTACTCTCATCCGAAGAACTCGACTGATGGATCTTCGTGGCTAGCTGTTGAGTCGGTTCCTGACAATATATGTACCGCC
TTCTTCCAACCGATCGGAGGCGGTCCTTGCGGATACAACAGCTACTGCTCGCTCGAGAATTCGAGGCGGCCATCGTGCGCCTGTCCTCCGGGGTACGTGG
CTGCGGATCTAGAAGACAGAGCTGCTGGCTGCAGACCGACGTACCCTCAGGGGTGCGGATTAGGCCTCAATGGTGATGTATTCGAGATAAAGAAGCTTAC
CGGGGTGGACTTCTTCTTGAACGATTATGAGAGGCTGCAGATCGACAACGAGTCCATCTGCGAGGAGACTTGCTTGAGGGACTGCCATTGTGCTGTTGCA
TTGTTTGATGGTGTTCTCTGCTGGAAGAAGAGGCTGCCGCTGTCGAATGGACAGACGTTTACGTCGAACTTCGTGAGGCTCATGTTCAAGGTAAGGAAAG
AAGGTGCTCCGAATTCGGGGGGTCCCGAGGTTGGCAGTGGCGGGGAGAGGTATCCACTATTGAGAACAATTTTGTGGAGTTCTGTGGGGTTTAATGGTTT
TATAGCGGTTTTCTTGGCTTTGTTGTCACTGTTCCTCGTTAGAACAAAGAACAGTGACGGCGAAGCTTCCTCTTGCAATTTCGAGACGAGTAATCTTCGT
TCCTTCGGCTACAAGCAACTGGAGGAAGCCACTGATGGATTCATGGAAGAACTAGGGCGAGGCTCGTTCGGAACAGTGTACAAGGGTGGCATTGGGAACC
ATGCCGTGGCAGTTAAGAAACTAGACAAGCTAGCTCAAGAAAGGGAAAAGGAGTTCAAAGCCGAGGTCAATGCAATCGGGAGGACCCATCACAAGAATCT
AGTGAGACTGCTAGGGTTCTGCGACGAATCCTCCCACCGCCTTCTGGTTTACGAGTTCATGCCCAACGGCACTCTGGCAAGCTTCCTGTTCGCCTCCCCC
AGGCCAGACTGGCACCACAGAGTCCGGATCTCAATAGGGATCGCTCGGGGACTCGTGTACCTGCATGAGGAATGTCCGGTCCCCATCATCCACTGTGACA
TCAAGCCCCAAAACATCCTCCTGAACGGTTCCTTGACACCCAAGGTTTCTGATTTTGGCATGGCCAAGCTGATGCTAATGCAATCCGGCAATCACACGGC
CAAGACCGTGAATATTCGTGGGACTAGAGGGTATGTAGCGCCTGAGTGGTTCAAGATCGACACAGAGGGGGTCACTTCAAAGGTGGATGTGTACAGCTTC
GGGGTGATGCTGCTAGAGATCATCTGCTGCCGGAAAAGTGTCGAGACGGAGATGGAGGAATGTAAGGTGATGTTGGTTGATTGGGCTTACGAATGCTTCG
TTAAAGGGAGTGTTGATCTCTTATTGGGGAAAGACGAAGAAGTCGAAGCCGTCGTTGATGGCGATGATGGGTCGAGGTTGATGGAGAAGTGGGTTTTGAT
TGCCTTGTGGTGTGTTCAAGAGGATCCTGCAGTTAGGCCTAAGATGAAGAGGGTTTTGGAGATGTTGGAAGGTTTGGTTGAGGTTCCTTCTTTGTTGCCT
TATCCTACAAGTTAA
AA sequence
>Lus10010992 pacid=23148683 polypeptide=Lus10010992 locus=Lus10010992.g ID=Lus10010992.BGIv1.0 annot-version=v1.0
MASSLLLLIQFILFPLLNLHSTTANVTLSSSLTAGFNSVWESPSGNFAFGFSQLNSSSSLFLLSIWFNKIPSRTIVWYANGETPVPKGSRVILTSSGLAL
TDPGGKLVWQATSSSSSILYASMLDTGNFVLVSNGSSKDYVWESFSNPRDTILPNQTVDSGAVLFSKLTESNYSRGRFALRFSNGSLDLLPVAYPDLNFS
NSNSDSFYEKYYTSGTYSSDPLETGSELVFNSSAQIYVVKVNGDVSRLSSWDFVAYRADFYYRATLDFDGVFTQYSHPKNSTDGSSWLAVESVPDNICTA
FFQPIGGGPCGYNSYCSLENSRRPSCACPPGYVAADLEDRAAGCRPTYPQGCGLGLNGDVFEIKKLTGVDFFLNDYERLQIDNESICEETCLRDCHCAVA
LFDGVLCWKKRLPLSNGQTFTSNFVRLMFKVRKEGAPNSGGPEVGSGGERYPLLRTILWSSVGFNGFIAVFLALLSLFLVRTKNSDGEASSCNFETSNLR
SFGYKQLEEATDGFMEELGRGSFGTVYKGGIGNHAVAVKKLDKLAQEREKEFKAEVNAIGRTHHKNLVRLLGFCDESSHRLLVYEFMPNGTLASFLFASP
RPDWHHRVRISIGIARGLVYLHEECPVPIIHCDIKPQNILLNGSLTPKVSDFGMAKLMLMQSGNHTAKTVNIRGTRGYVAPEWFKIDTEGVTSKVDVYSF
GVMLLEIICCRKSVETEMEECKVMLVDWAYECFVKGSVDLLLGKDEEVEAVVDGDDGSRLMEKWVLIALWCVQEDPAVRPKMKRVLEMLEGLVEVPSLLP
YPTS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G60900 RLK1 receptor-like protein kinase 1... Lus10010992 0 1
AT2G01170 BAT1 bidirectional amino acid trans... Lus10029533 4.0 0.9501
AT3G48280 CYP71A25 "cytochrome P450, family 71, s... Lus10019457 4.0 0.9480
AT1G29860 WRKY ATWRKY71, WRKY7... WRKY DNA-binding protein 71 (.... Lus10004537 7.7 0.9384
AT4G21120 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTE... Lus10023271 13.3 0.9364
AT1G13550 Protein of unknown function (D... Lus10031914 17.3 0.9133
AT3G10980 SAG20, WI12, AT... PLAC8 family protein (.1) Lus10012212 20.0 0.9276
AT2G26930 CMK, CMEK, ISPE... PIGMENT DEFECTIVE 277, 4-\(cyt... Lus10036098 20.2 0.9299
AT1G17020 ATSRG1, SRG1 senescence-related gene 1 (.1) Lus10026173 23.1 0.9162
AT5G23160 unknown protein Lus10010194 25.2 0.9212
AT1G80300 ATNTT1 nucleotide transporter 1 (.1) Lus10025755 27.7 0.9220

Lus10010992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.