Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08180 229 / 2e-78 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) AT4G12600 59 / 1e-11 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) AT5G20160 57 / 3e-11 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) AT4G22380 57 / 3e-11 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT2G47610 45 / 3e-06 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT3G62870 42 / 7e-05 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000421 [exp] 300 / 1e-106 AT5G08180 240 / 9e-83 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10040161 [exp] 261 / 6e-91 AT5G08180 226 / 4e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10004366 [exp] 259 / 4e-90 AT5G08180 227 / 1e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10017031 [exp] 61 / 2e-12 AT4G22380 220 / 2e-75 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10019420 [exp] 62 / 7e-12 AT5G55190 443 / 8e-159 RAN GTPase 3 (.1) Lus10043276 [exp] 62 / 8e-12 AT5G55190 428 / 9e-153 RAN GTPase 3 (.1) Lus10015295 [exp] 57 / 4e-10 AT4G22380 217 / 7e-72 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10025435 [exp] 56 / 1e-09 AT4G22380 203 / 7e-66 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10010763 [exp] 42 / 4e-05 AT3G62870 441 / 3e-159 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G110100 [exp] 241 / 4e-83 AT5G08180 225 / 8e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Potri.013G116800 [exp] 60 / 3e-12 AT4G12600 216 / 3e-74 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Potri.019G087100 [exp] 57 / 5e-11 AT4G12600 213 / 9e-73 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Potri.004G113800 [exp] 42 / 3e-05 AT3G62870 399 / 5e-142 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.017G100800 [exp] 42 / 4e-05 AT3G62870 377 / 1e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.017G101000 [exp] 42 / 4e-05 AT3G62870 376 / 3e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.004G113900 [exp] 41 / 0.0001 AT3G62870 362 / 7e-127 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.001G326400 [exp] 40 / 0.0003 AT2G47610 385 / 1e-136 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Representative CDS sequence Show only first row Show all	>Lus10010993 pacid=23148669 polypeptide=Lus10010993 locus=Lus10010993.g ID=Lus10010993.BGIv1.0 annot-version=v1.0 ATGGAGAAGTCGCAGAAGAAAGAAAAGAAGACGACTCCGGTAACTCTAGCTCCCATCGCCAAGCCCCTCGCTGGGAAGAAGCTCTGCAAGCGGACTTTCA AGCTCGTCCGTAGAGCTGCTGATAATAAGTGCTTGAAAAGAGGAGTGAAGGAGGTTGTCAAGAGCATTCGACGTGGGAATAAAGGGATATGCATCATTGC CGGGAACATATCTCCGATCGATGTCATAACTCACGTCCCAATACTGTGTGAAGAGGCTGAAGTTCCATACTTCTATGTTCCTTCAAAAGAAGATCTTGCA ACTGCAGGAAACACGAAGAGGCCTACGTGCTGCGTGTTGGTTCAGATGAAGCCTGCCAAGGGAGAGTTGGCTAAAGAAGAACAAGAGAAGTTGAAGTCTG ATTATGATCAAGTTGTAGCTGATGTATCTGAACTCAGTTCCTCTCTTTTCTGA
AA sequence Show only first row Show all	>Lus10010993 pacid=23148669 polypeptide=Lus10010993 locus=Lus10010993.g ID=Lus10010993.BGIv1.0 annot-version=v1.0 MEKSQKKEKKTTPVTLAPIAKPLAGKKLCKRTFKLVRRAADNKCLKRGVKEVVKSIRRGNKGICIIAGNISPIDVITHVPILCEEAEVPYFYVPSKEDLA TAGNTKRPTCCVLVQMKPAKGELAKEEQEKLKSDYDQVVADVSELSSSLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10010993 [exp]	0	1
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	3.2	0.8793
AT2G19730			Ribosomal L28e protein family ...		Lus10037609 [exp]	6.2	0.8485
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10021315 [exp]	6.9	0.8513
AT4G18100			Ribosomal protein L32e (.1)		Lus10012195 [exp]	7.1	0.8345
AT4G39200			Ribosomal protein S25 family p...		Lus10035060 [exp]	7.2	0.8469
AT2G19730			Ribosomal L28e protein family ...		Lus10006869 [exp]	9.2	0.8296
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10018666 [exp]	11.0	0.8173
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10026413 [exp]	11.4	0.8133
AT5G56940			Ribosomal protein S16 family p...		Lus10025984 [exp]	13.0	0.8192
AT3G29310			calmodulin-binding protein-rel...		Lus10026469 [exp]	14.0	0.7599

Compare expression of checked genes

Lus10010993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.