Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16800 318 / 2e-108 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G43280 92 / 4e-21 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT4G16210 77 / 6e-16 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT3G06860 78 / 1e-15 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT1G60550 74 / 1e-14 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1) AT4G29010 74 / 4e-14 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT3G24360 66 / 7e-12 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000420 [exp] 294 / 6e-100 AT4G16800 156 / 1e-46 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10011336 [exp] 95 / 3e-22 AT5G43280 404 / 8e-144 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10002583 [exp] 90 / 1e-20 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10029142 [exp] 76 / 3e-15 AT1G60550 512 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10013023 [exp] 76 / 3e-15 AT1G60550 514 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10037495 [exp] 73 / 7e-14 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10006501 [exp] 72 / 7e-14 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10043224 [exp] 67 / 4e-12 AT4G29010 1063 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10010685 [exp] 62 / 2e-10 AT4G31810 575 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G153300 [exp] 382 / 2e-133 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.003G080800 [exp] 272 / 1e-90 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G061000 [exp] 102 / 2e-25 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.008G220400 [exp] 82 / 4e-17 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.010G146400 [exp] 76 / 1e-15 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.010G011900 [exp] 75 / 1e-14 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.001G329900 [exp] 73 / 3e-14 AT1G60550 550 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Potri.018G082900 [exp] 67 / 4e-12 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Potri.006G156350 [exp] 65 / 1e-11 AT4G13360 608 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.006G155700 [exp] 63 / 5e-11 AT4G13360 611 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10010994 pacid=23148646 polypeptide=Lus10010994 locus=Lus10010994.g ID=Lus10010994.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTACGGACGACTACGCGATCCTTGATCCGCCATTACTCGAAGAACCCAGCAGCCTCTGCCTTACATCGCTATCAAACTCGGCGGGCGCTGA TCTTGGAGCCGTTATCTTCCGGATCAGTCCAGGTCCGGCGTCTCTCCGATGCCGATTCCGGGATTGTGGAGGTGAACTTGCACAGGCCGGAAGCGAGGAA CGCGATCGGGAGCGAGATGCTGAGAGGATTGAGGCATACTTTCGAGACGCTTGAGACGAACGACGAAGCAAACGTGGTTATGATCTCTAGCTCCGTTCCC AAGGCCTTCTGCGCTGGTGCTGATTTGAAGGAACGTAAGGAAATGACTGCCTCAGAAGTTGAGTTCTTTGTCCACACACTCCGCTCAACGTTTGAACTCA TAGAGGCTCTTCGAGTTCCGACGATTGCTGTAATCGAAGGAGTAGCATTGGGAGGTGGACTTGAACTGGCTTTATCATGCGATCTTCGGATTTGCGGAGA AAATGCAGTTCTGGGATTGCCTGAAACTGGACTCGCTATAATTCCTGGGGCTGGTGGGACTCAGAGACTGCCTCGAATCGTGGGCAAATCAGTGGCGAAA GAACTCATATTTACCGGTCGTAGGATCGGAGGCAAAGAGGCAATGTTGATCGGGCTTGCCAATTATACAGTGCCTGCTTGGACAGCTCGTACGAAAGCAC TTGAAGTTGCTCGAGAAATCAACCAGAAGTCTGGTGACCAACAGGGACCAATAGCGATCAGGTTGGCAAAGAAGGCCATTGACGAGGGGATCCAAATGGA CATGGAACGGGGGCTGGAGTTCGAAAAGGAGTGTTACGAGCAGCTCATCGACACTAACGACCGCCTCGAAGGGCTGGCTGCATTTGCAGAAAAGCGGAAA CCAATATACACAGGACAGATCGGACCGATCGTTGAATCGGCCAGGCAAGATGTTCGAGGATCAAAAGGTTCAACCCTGGATGAACTGTAA
AA sequence Show only first row Show all	>Lus10010994 pacid=23148646 polypeptide=Lus10010994 locus=Lus10010994.g ID=Lus10010994.BGIv1.0 annot-version=v1.0 MEALRTTTRSLIRHYSKNPAASALHRYQTRRALILEPLSSGSVQVRRLSDADSGIVEVNLHRPEARNAIGSEMLRGLRHTFETLETNDEANVVMISSSVP KAFCAGADLKERKEMTASEVEFFVHTLRSTFELIEALRVPTIAVIEGVALGGGLELALSCDLRICGENAVLGLPETGLAIIPGAGGTQRLPRIVGKSVAK ELIFTGRRIGGKEAMLIGLANYTVPAWTARTKALEVAREINQKSGDQQGPIAIRLAKKAIDEGIQMDMERGLEFEKECYEQLIDTNDRLEGLAAFAEKRK PIYTGQIGPIVESARQDVRGSKGSTLDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16800			ATP-dependent caseinolytic (Cl...		Lus10010994 [exp]	0	1
AT1G80570			RNI-like superfamily protein (...		Lus10002665 [exp]	2.2	0.8975
AT4G17250			unknown protein		Lus10028936 [exp]	3.9	0.8825
AT4G31410			Protein of unknown function (D...		Lus10020151 [exp]	6.2	0.8837
AT2G23790			Protein of unknown function (D...		Lus10019663 [exp]	11.8	0.8735
AT1G25500			Plasma-membrane choline transp...		Lus10041476 [exp]	15.8	0.8527
AT1G36730			Translation initiation factor ...		Lus10010981 [exp]	19.2	0.8305
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	19.9	0.8759
AT1G07040			unknown protein		Lus10013272 [exp]	22.5	0.8699
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	22.6	0.8822
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018781 [exp]	25.9	0.8750

Compare expression of checked genes

Lus10010994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.