Plant FIBer expression Database

Lus10010995 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16807 54 / 1e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000419
[exp]
283 / 9e-95 AT4G16807 66 / 2e-11 unknown protein
Lus10010996
[exp]
57 / 2e-09 AT4G16807 66 / 3e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G080700
[exp]
55 / 7e-09 AT4G16807 117 / 2e-28 unknown protein
PFAM info
Representative CDS sequence
>Lus10010995 pacid=23148655 polypeptide=Lus10010995 locus=Lus10010995.g ID=Lus10010995.BGIv1.0 annot-version=v1.0
ATGGAGGAGAGCTCGACTGATTCCGCAGGTTTCCATTATTCGGATTCGTTCTCGCTTCCGTCAGAGCCTCCTGATATAAGGAACTGGTTTTCCAGCTACA
AGTATGAATCTTTTGTTCTGGATACTTGCGATGATGCATTCGGAACGAAACCTCGAGGTGATGCAATTGATAGGGATTCGAGCGAGCCCTTGAAAATTGA
AGAGGGCCAGACTTTCAGTGAGGTAGTGCCAGACTCATCGTACTCGCAGTCAGTCCTTAATGAACCTCATCATCCTGATAACTGGCTTTCGACCTGTGTC
CCCGAGACTTGTGGACTCGATCATGATGATGATGACGAAGAATTCGAGACTGCTCCTAGTGAAGGCAAAGTTGATGCGTTTTCCAAGGAAGGTATCGAGA
ATCTCGAGAAGTCAAATAGCAAAAACAGTGATTTGCGGACACCACCTGAAAGGCCTTCTTCAGGTGAGTTGTTTCGGAATGAGTGCAGCCCTTCACGGGA
GGTGCTAGACTCTGAATACTCACAGTCAGTTCTTCATGGTCGGTATCATCCCAAATGCTCTCTTTCAATTCTTAGGAAACTCTTTATCTTACGAATGCCT
AGCAATTACAGGATGTATGTGACCACCGTCTAA
AA sequence
>Lus10010995 pacid=23148655 polypeptide=Lus10010995 locus=Lus10010995.g ID=Lus10010995.BGIv1.0 annot-version=v1.0
MEESSTDSAGFHYSDSFSLPSEPPDIRNWFSSYKYESFVLDTCDDAFGTKPRGDAIDRDSSEPLKIEEGQTFSEVVPDSSYSQSVLNEPHHPDNWLSTCV
PETCGLDHDDDDEEFETAPSEGKVDAFSKEGIENLEKSNSKNSDLRTPPERPSSGELFRNECSPSREVLDSEYSQSVLHGRYHPKCSLSILRKLFILRMP
SNYRMYVTTV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G16807 unknown protein Lus10010995
[exp]
0 1
AT1G79890 RAD3-like DNA-binding helicase... Lus10011447
[exp]
4.6 0.9274
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 (.1) Lus10032469
[exp]
7.1 0.9168
AT5G43530 Helicase protein with RING/U-b... Lus10041156
[exp]
10.8 0.9147
AT3G61740 SDG14, ATX3 SET domain protein 14 (.1.2) Lus10004012
[exp]
12.2 0.9120
AT5G49830 EXO84B exocyst complex component 84B ... Lus10024928
[exp]
12.6 0.8500
Lus10020840
[exp]
13.1 0.8485
AT5G24330 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDO... Lus10040793
[exp]
15.2 0.7779
Lus10026146
[exp]
15.8 0.9100
AT3G27640 Transducin/WD40 repeat-like su... Lus10014560
[exp]
18.5 0.8955
AT1G53470 MSL4 mechanosensitive channel of sm... Lus10038148
[exp]
19.2 0.8630

Lus10010995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.