Plant FIBer expression Database

Lus10010996 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16807 59 / 6e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000419
[exp]
412 / 3e-144 AT4G16807 66 / 2e-11 unknown protein
Lus10010995
[exp]
52 / 6e-08 AT4G16807 54 / 1e-08 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G080700
[exp]
67 / 1e-12 AT4G16807 117 / 2e-28 unknown protein
PFAM info
Representative CDS sequence
>Lus10010996 pacid=23148677 polypeptide=Lus10010996 locus=Lus10010996.g ID=Lus10010996.BGIv1.0 annot-version=v1.0
ATGTTTTTTCCAGAGCCTCATCATCCTGATAACTGGATTTCTACCTGTCTACCTGAGACCTGTGGATCGGATCTCGAGGAAGATGAATTCAGTCAAACCA
AGGAAGGGATTGACAAAGGCGAGAATTTTGAGAATCCGAACAGCAAAAGCTGTTGTGATTTGGATGCTCTTGAAAAGCCTTCTTCAGATGAGATAGTCAA
TGAGGAAGAAAGACATTCACAGAAGGAGAATTTGGTTCCTTATTCTCAGGTTTCGATTCTTTCGGAGCCGCCTGAGATTAAGAACTGGTTCTCCAGCTAT
GCTTATGAATCTCCTGTGTTGGATGGAGAAATTAACAATGGAGGAGTTTTTGAATCCGAGTCTCAGCATGTAGACAACAGTTTCATTGACCAAGAACCAA
AGGAAGATGGAGAATTGAACTCTCATAGCATAGATAAGGAACCAAACACAAAGCTGACTCCTGATGAACATTCAGCTTCATCCTTCAAACCAGCAGGATC
AACTGGACCCTCTTCAACCAGTGGCTTTGTGACAACAAGGAAGAACAAGTCCACAAAACGACTGAACCACAACGAGAATTCGTACCCCGGGTCGACACAA
CATGCTGCAGCAAAGTGCCTCAAGAGTGAGAGGCTGGTGATCAGTTCTTCAAGGAACAGAAATGTGTTATCAGAAAGAACAAATGTAGTTCTGCAGCCTC
AGCCTGAAGTTACTGGGAAATGGAAATGCCCTCAGAGGAATAAACCAGCTATGGGACCTCCACTGAAGCAGCTAAGACTAGAGAGATGGGTTACTAAGCT
GTGA
AA sequence
>Lus10010996 pacid=23148677 polypeptide=Lus10010996 locus=Lus10010996.g ID=Lus10010996.BGIv1.0 annot-version=v1.0
MFFPEPHHPDNWISTCLPETCGSDLEEDEFSQTKEGIDKGENFENPNSKSCCDLDALEKPSSDEIVNEEERHSQKENLVPYSQVSILSEPPEIKNWFSSY
AYESPVLDGEINNGGVFESESQHVDNSFIDQEPKEDGELNSHSIDKEPNTKLTPDEHSASSFKPAGSTGPSSTSGFVTTRKNKSTKRLNHNENSYPGSTQ
HAAAKCLKSERLVISSSRNRNVLSERTNVVLQPQPEVTGKWKCPQRNKPAMGPPLKQLRLERWVTKL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G16807 unknown protein Lus10010996
[exp]
0 1
AT5G23420 HMGB6 high-mobility group box 6 (.1.... Lus10041009
[exp]
1.4 0.9584
AT5G50930 Histone superfamily protein (.... Lus10022425
[exp]
2.0 0.9155
AT3G46320 Histone superfamily protein (.... Lus10019956
[exp]
4.2 0.9268
AT2G20980 MCM10 minichromosome maintenance 10 ... Lus10019785
[exp]
5.5 0.9013
Lus10003273
[exp]
6.3 0.8840
AT3G60660 unknown protein Lus10010359
[exp]
6.5 0.9100
AT3G27640 Transducin/WD40 repeat-like su... Lus10032126
[exp]
6.9 0.9161
AT5G04250 Cysteine proteinases superfami... Lus10037388
[exp]
8.3 0.8833
AT5G56120 unknown protein Lus10027112
[exp]
9.2 0.9112
AT5G23420 HMGB6 high-mobility group box 6 (.1.... Lus10013453
[exp]
10.0 0.9153

Lus10010996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.