Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16820 545 / 0 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 321 / 8e-106 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G30370 269 / 2e-83 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G51440 251 / 1e-76 alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 248 / 2e-75 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G06800 246 / 7e-75 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G05800 199 / 8e-58 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 199 / 2e-57 alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 194 / 3e-56 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 189 / 3e-54 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040158 [exp] 784 / 0 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 784 / 0 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10000600 [exp] 530 / 0 AT4G16820 304 / 4e-101 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 307 / 3e-99 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10041165 [exp] 303 / 3e-98 AT2G44810 464 / 4e-164 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 268 / 2e-84 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 263 / 2e-82 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 266 / 4e-82 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 241 / 2e-72 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G153100 [exp] 751 / 0 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G081500 [exp] 744 / 0 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047700 [exp] 316 / 1e-102 AT2G44810 491 / 9e-174 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047900 [exp] 301 / 4e-97 AT2G44810 557 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G137900 [exp] 300 / 8e-97 AT2G44810 543 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 270 / 5e-84 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 266 / 3e-82 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G051900 [exp] 263 / 3e-81 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 253 / 2e-77 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G044700 [exp] 251 / 1e-76 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10010997 pacid=23148635 polypeptide=Lus10010997 locus=Lus10010997.g ID=Lus10010997.BGIv1.0 annot-version=v1.0 ATGATGCAGGTCGCGATCGGAACTACTCTCCCGGCTCACAACCTCAGCCGCTTCCACGCCAAACGCGTAGGAAGCTTCACCTACCGACAATCGCCTCTCA ATCCTTCAAAACCATCTACAATCTCCGCTTCCGCTTCTTCTTCGTCGGCGACGACGGTCCCGATCTCTTCCACCGACTACACCAAGAAGCACCTGTCAAC CCTCGAGAAGCTTCTCCAGAAGCAGTCCCCTGAATCCAACGCCAGATCCGACTCTGTCCCGAAGCCGAACGTTCCCAGATCCGACGGATCGTCGGCGGCA GGAGTAAGAGCTTCGGCTAATTTGATAAGCAGAGGGAAGAGCTTAATGGAGGGGCTGAATCTGGCAAGGATCTGGCCGGAGATGAAGGCGGCGGAGGAGA TGTCGCCTAGGCATCTGAATCGGCTTCAGCGGCTGCTGTCGAAGACGGCGGAGTATTCGCCGAGGAACAGCTTGGCTTGCCGGTGGAGGGAGTATCACGG TAGTAAGGATTGGGAAGGGATGTTGGATCCGCTGGATGAGAATCTCCGGCGGGAGGTGGTTAGGTACGGCGAGTTTGTTCAGGCGGCGTATCACGCTTTC AACTCGGACCCGGCGGTGGAGGCGGATAAAGTACCGCTGCCGAGACACGTCGCGCTTCCTGATAGGTCGTACAGAGTCACCAAGAGTTTATACGCTACGT CATCGGTTGGGCTGCCGAAGTGGGTCGATGACGTGGCACCGGATCTCGGGTGGATGACCCAGCGAACCAGCTGGGTCGGGTACGTAGCGGTTTGTGAAGA CCGGAGAGAGATTCAACGGATGGGTAGGAGGGATATAGTCATCGCCTTACGTGGCACATCCACTTGTCTAGAATGGGCCGAAAATATGAGAGCCCAATTA GTCCCGGTATCCGAAACCGAATCCGACTCTACCCAAAACCAACCGAAAGTAGAATGCGGGTTCCAAAGCCTATACAAGACGAAAGGCGCCCACGTGGCGA GCCTAGCCCAATCCGTAACCGATGAGGTGAAACGACTCATGGAACGGTATAAGGGTGAAACGTTGAGCATAACCGTGACAGGCCACAGCCTGGGAGCTGC CCTGTCAGTGCTCGTGGCAGACGAGCTGAGCACGTGCTCCCCCGAAGTCCCACCGGTAGCGGTTTTTTCCTTTGGGGGACCACGCGTTGGCAACAGGGCG TTCGGGAACAGACTGGCGGACAAATCCGTCAAGGTGCTCCGGATTGTGAACGACCAGGATCTTATCACCCGGGTCCCCGGTTTGCCGCCCCTGGTGGACG GACTGACCAACGACGCTTACACCCACGTGGGGACGGAGCTACGAGTCGACACGAAGATGTCGCCGTACCTGAAACCGAATGCTGATGTGGCGTGCTGCCA CGACCTCGAGGCCTACTTGCACTTGGTGGATGGGTTTATAGGGAGCGATTGCCCCTTTAGGTTGAATGCTAAGAGGAGTTTGGTTAAGTTGTTGAGTGAG CAAAGGTCGAATGTGAAGCAATTGTACACAAACAAGGCTCATGCTTTGAGCTTGAAATTTGAAAGGCAAGGGCTTGCGGCTAGTGGGTGCTTGCCTAGTC CATCTTCTTGA
AA sequence Show only first row Show all	>Lus10010997 pacid=23148635 polypeptide=Lus10010997 locus=Lus10010997.g ID=Lus10010997.BGIv1.0 annot-version=v1.0 MMQVAIGTTLPAHNLSRFHAKRVGSFTYRQSPLNPSKPSTISASASSSSATTVPISSTDYTKKHLSTLEKLLQKQSPESNARSDSVPKPNVPRSDGSSAA GVRASANLISRGKSLMEGLNLARIWPEMKAAEEMSPRHLNRLQRLLSKTAEYSPRNSLACRWREYHGSKDWEGMLDPLDENLRREVVRYGEFVQAAYHAF NSDPAVEADKVPLPRHVALPDRSYRVTKSLYATSSVGLPKWVDDVAPDLGWMTQRTSWVGYVAVCEDRREIQRMGRRDIVIALRGTSTCLEWAENMRAQL VPVSETESDSTQNQPKVECGFQSLYKTKGAHVASLAQSVTDEVKRLMERYKGETLSITVTGHSLGAALSVLVADELSTCSPEVPPVAVFSFGGPRVGNRA FGNRLADKSVKVLRIVNDQDLITRVPGLPPLVDGLTNDAYTHVGTELRVDTKMSPYLKPNADVACCHDLEAYLHLVDGFIGSDCPFRLNAKRSLVKLLSE QRSNVKQLYTNKAHALSLKFERQGLAASGCLPSPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10010997 [exp]	0	1
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	2.4	0.9200
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10018488 [exp]	4.6	0.8687
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	6.2	0.8836
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	6.9	0.8534
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	10.0	0.8666
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	10.4	0.8292
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	11.6	0.8403
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	12.4	0.8598
AT4G27270			Quinone reductase family prote...		Lus10006748 [exp]	12.5	0.8553
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	12.7	0.8509

Compare expression of checked genes

Lus10010997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.