Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16835 779 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 575 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 501 / 2e-168 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G56690 476 / 6e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 477 / 2e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 458 / 6e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 464 / 5e-150 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 455 / 1e-149 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G46460 451 / 2e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 449 / 1e-148 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000597 [exp] 820 / 0 AT4G16835 545 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 555 / 0 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 492 / 5e-165 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015256 [exp] 481 / 2e-161 AT5G46460 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 478 / 3e-157 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 470 / 2e-155 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10029344 [exp] 462 / 1e-154 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024876 [exp] 462 / 8e-152 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10001617 [exp] 454 / 2e-151 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081700 [exp] 877 / 0 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 545 / 0 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G005400 [exp] 507 / 4e-171 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G006400 [exp] 495 / 2e-166 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 479 / 7e-160 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 472 / 1e-158 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 476 / 2e-158 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G354400 [exp] 473 / 3e-158 AT5G46460 863 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G011000 [exp] 473 / 2e-156 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 469 / 9e-156 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010998 pacid=23148617 polypeptide=Lus10010998 locus=Lus10010998.g ID=Lus10010998.BGIv1.0 annot-version=v1.0 ATGGTAGGCTACTTTTCCAACATTGTGGCAATGCCACGTCAGGGGGAAAACCGGACTGATTCGAACCGAAACGAACCGTCTATCGCAAGTGTTACTAGCT CAGAGCTCACCAACTTTTGTTTATTTAATCCTGCTCGTCGTAAAATGAACTTCTTTCGACGGAAGCTGAAGATTCCTCCGGCGATCAATCTCCTCCGCCG TTCTCCTTCAACAGTACACCCATGGCTTCTTTTCTCCACCTCCACCAACACCGCCGACGAAACCTTAGCTCCATGTCCAGGATCCACCACCGATTCAACG CCGATCAAGCAACCACCACCACCGCGATCGCGATCGCCATACTATCATGGAGCCAATGACGTGATCCTCTCCAACATGATGATCACGAGCTACATCCGGT CCGGCGACCTCAATTCCGCTCTCGACATCTTCCGCAACATGACGATCAAAACTACAGTCACATGGAACTCCATTTTGGCCGGATACTCAAAGTTGCCGGG GAAATTGAGGGATGCACAGAAGGTGTTTGTGGAAATTCCTCAACCAGATACTGTGTCTTATAACACAATGCTATTCTGCTACGTAAATTCGTCTCAAATC GAATCGGCTATGTCATTCTTCGATCGGATTCCTAACAAGGATACTGCTTCCTACAACACGATGATCTCCGGGTTCGCTCAGAATCGACGAATGGCGGAAG CTGCCTCGCTGTTTAACGCAATGGCAGTGAAGAGGAATGTTGTTACGTGGAATGCTATGATCTCTGGCTACGTGGAATGTGGAGAAATGGAGGAAGCTGT GAAGCTCTTCGAAATGGCTCCGGTTAAGACCGTAGTAGGTCGAACAGCCATCTTGTCCGGGACAATGAAGCTTGGGGATGTGGGGATGGCGGAGAGGATG TTTATGGAGATCCCTGAGAAGAATTTGGTGACTTGGAACGCGATGATTTCGGGCTATGTGGAAAATGGTAGAGCTGAGGATGGAGTGAAGCTGTTTAAGG AGATGGTAAGGAACGGTTTAGGGGCGAATTCTTCGACATTGAGCAGTGTTCTGTTGGGGTGCAGTGAGCTATCTGCTCTGCAATTAGGGAAGCAGGTTCA TCAATGGGTGTGTAAGTCCCCGTTGAGCTCGAAAAATCGAACTGTTTCGACATCGTTGATTAGCATGTACTGTAAGTGTGGTGAGCTGGAAGATGGTTAT AGATTGTTCATGGAGATGGAAGGTAAAGACGCTGTGGCGTGGAACGCGATGATTTCGGGGTACGCTCAGCACGGAGAAGGATCGATTGCGCTTAATTTAT TCGACCGGATGAAGGAAAGTTCGGTTAAACCAGACTGGATAACTTTCATTGCGGTTTTGCTAGCGTGTAATCATGCTGGGTTGGTTGATGTCGGTAGAGA GTATTTCGATTCGATGAGGAAGGATTACGAGGTGGAGCCTAGGCCGGATCATTATAGTTGTATGGTTGATCTGCTGAGCCGAGCTGGTAAACTCGACTCA GCAGTCGAGTTGATCAAGAACATGCCTTTCAAGCCTCATCCGGCTATATACGGGACCCTTCTGGGTGCCTGCAGGGTGCACAAGAATACAGAAGTTGCAG AGTTTGCAGCAAAGAACTTGGTCGAGCTTGATCCAGCAAGCTCGACTGCTTACGTACAGCTTGCAAATGTCTACGCAGCGACCAAGAAATGGGACGATGT TGCTAGAGTTCGTCGATTGATGAAGAGAAGCAATGTGGTGAAGATGCCTGGCTACAGCTGGATTGATGTCAAGAACAAAGTCCACGAGTTTCGATCAGGG GACCAGGTTCACCCCGAGTTGGATTCGATTCACCGGAAGCTGGACGACCTGGAGAAGAGGATGAAGCGAGGCGGGTATGTCGCAGACCTCGAGTCTGCAT TGCACGATGTTGGTGATGAGCAGAAGGAGCAGATGCTGCTGAGGCACAGCGAGAAGCTGGCGATTGCGTACGGACTGATCAAGCTGCCAGAAAGTGTTCC GATTCGAGTGTTTAAGAACTTGAGGATATGCGAGGACTGCCATCGTGCAGCCAAGTGCATCTCGAAAGTCGAAGGGAGGGAGATTGTCGTGAGGGATACT ACGAGGTTTCATCACTTTAAAGATGGGTCTTGTTCTTGTGGAGATTACTGGTAG
AA sequence Show only first row Show all	>Lus10010998 pacid=23148617 polypeptide=Lus10010998 locus=Lus10010998.g ID=Lus10010998.BGIv1.0 annot-version=v1.0 MVGYFSNIVAMPRQGENRTDSNRNEPSIASVTSSELTNFCLFNPARRKMNFFRRKLKIPPAINLLRRSPSTVHPWLLFSTSTNTADETLAPCPGSTTDST PIKQPPPPRSRSPYYHGANDVILSNMMITSYIRSGDLNSALDIFRNMTIKTTVTWNSILAGYSKLPGKLRDAQKVFVEIPQPDTVSYNTMLFCYVNSSQI ESAMSFFDRIPNKDTASYNTMISGFAQNRRMAEAASLFNAMAVKRNVVTWNAMISGYVECGEMEEAVKLFEMAPVKTVVGRTAILSGTMKLGDVGMAERM FMEIPEKNLVTWNAMISGYVENGRAEDGVKLFKEMVRNGLGANSSTLSSVLLGCSELSALQLGKQVHQWVCKSPLSSKNRTVSTSLISMYCKCGELEDGY RLFMEMEGKDAVAWNAMISGYAQHGEGSIALNLFDRMKESSVKPDWITFIAVLLACNHAGLVDVGREYFDSMRKDYEVEPRPDHYSCMVDLLSRAGKLDS AVELIKNMPFKPHPAIYGTLLGACRVHKNTEVAEFAAKNLVELDPASSTAYVQLANVYAATKKWDDVARVRRLMKRSNVVKMPGYSWIDVKNKVHEFRSG DQVHPELDSIHRKLDDLEKRMKRGGYVADLESALHDVGDEQKEQMLLRHSEKLAIAYGLIKLPESVPIRVFKNLRICEDCHRAAKCISKVEGREIVVRDT TRFHHFKDGSCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10010998 [exp]	0	1
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10015912 [exp]	1.7	0.7763
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10017243 [exp]	11.5	0.7443
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	13.3	0.7713
AT3G51650			unknown protein		Lus10025247 [exp]	14.8	0.7563
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10009637 [exp]	16.1	0.6528
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10037340 [exp]	23.1	0.7302
AT3G47530			Pentatricopeptide repeat (PPR)...		Lus10000274 [exp]	25.1	0.6876
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	29.1	0.7196
AT5G15710			Galactose oxidase/kelch repeat...		Lus10031955 [exp]	31.7	0.6988
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10016511 [exp]	36.4	0.6982

Compare expression of checked genes

Lus10010998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.