Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47200 387 / 3e-139 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT4G17530 385 / 1e-138 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT1G02130 372 / 1e-133 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT3G11730 320 / 7e-113 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT5G59840 251 / 2e-85 Ras-related small GTP-binding family protein (.1) AT3G46060 248 / 3e-84 ARA3, Ara-3, AtRABE1c, AtRab8A RAB GTPase homolog 8A (.1.2.3) AT3G53610 248 / 6e-84 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT3G09900 240 / 4e-81 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT5G03520 239 / 9e-81 ATRAB-E1D, AtRab8C, AtRABE1d ARABIDOPSIS RAB HOMOLOG E1D, RAB GTPase homolog 8C (.1.2) AT4G17160 193 / 9e-63 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000595 [exp] 421 / 2e-152 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10036442 [exp] 322 / 3e-113 AT3G11730 350 / 2e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10041117 [exp] 273 / 4e-93 AT3G11730 302 / 3e-104 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10037608 [exp] 250 / 2e-85 AT1G02130 255 / 1e-87 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Lus10005890 [exp] 247 / 1e-83 AT3G46060 396 / 2e-142 RAB GTPase homolog 8A (.1.2.3) Lus10005443 [exp] 244 / 1e-82 AT3G46060 394 / 2e-141 RAB GTPase homolog 8A (.1.2.3) Lus10007698 [exp] 227 / 6e-76 AT3G46060 378 / 1e-135 RAB GTPase homolog 8A (.1.2.3) Lus10024423 [exp] 224 / 5e-75 AT3G46060 376 / 7e-135 RAB GTPase homolog 8A (.1.2.3) Lus10023430 [exp] 224 / 3e-74 AT3G46060 364 / 3e-129 RAB GTPase homolog 8A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081800 [exp] 390 / 1e-140 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G080400 [exp] 384 / 3e-138 AT1G02130 387 / 2e-139 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.002G138400 [exp] 382 / 2e-137 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G152800 [exp] 381 / 7e-137 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.014G049400 [exp] 380 / 2e-136 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.004G226600 [exp] 330 / 9e-117 AT3G11730 364 / 4e-130 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.003G004000 [exp] 329 / 2e-116 AT3G11730 359 / 2e-128 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.009G027900 [exp] 253 / 6e-86 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3) Potri.008G051700 [exp] 252 / 1e-85 AT3G46060 329 / 7e-116 RAB GTPase homolog 8A (.1.2.3) Potri.010G208900 [exp] 251 / 2e-85 AT3G46060 349 / 5e-124 RAB GTPase homolog 8A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10010999 pacid=23148627 polypeptide=Lus10010999 locus=Lus10010999.g ID=Lus10010999.BGIv1.0 annot-version=v1.0 ATGAACACTGAATACGATTACTTGTTCAAGCTTTTGCTTATTGGAGATTCTGGAGTCGGCAAATCGTGTCTGCTTTTGAGATTCGCTGATGATTCGTACC TTGACAGCTACATCAGTACCATAGGAGTCGATTTCAAAATCCGCACTGTGGAGCAGGATGGGAAGACCATCAAACTCCAAATTTGGGACACAGCAGGGCA AGAGCGATTTAGGACGATCACCAGCAGTTACTACAGGGGTGCTCACGGGATCATTGTTGTTTATGATGTCACGGACCAAGAGAGTTTCAACAACGTAAAA CAGTGGCTGAACGAGATCGATCGCTACGCTAGCGAGCACGTGAACAAGCTTCTTGTGGGAAACAAGAGTGACCTCACTAGCAACAAAGTCGTTTCGTATG AAACAGGGAAGGCATTAGCTGATGAACTCGGTATCCCGTTCATGGAGACGAGTGCCAAGAACGCGTCCAACGTAGAAGACGCTTTCATGGCCATGTCAGC TGCAATCAAGACCAGGATGGCTAGCCAGCCCACGAACAATGCCAAGCCACCGACTGTCCAAATCCGTGGAGAACCGGTCAACCAGAAGTCAGGCTGCTGT TCTTCTTGA
AA sequence Show only first row Show all	>Lus10010999 pacid=23148627 polypeptide=Lus10010999 locus=Lus10010999.g ID=Lus10010999.BGIv1.0 annot-version=v1.0 MNTEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK QWLNEIDRYASEHVNKLLVGNKSDLTSNKVVSYETGKALADELGIPFMETSAKNASNVEDAFMAMSAAIKTRMASQPTNNAKPPTVQIRGEPVNQKSGCC SS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10010999 [exp]	0	1
AT3G59350			Protein kinase superfamily pro...		Lus10026706 [exp]	1.4	0.9098
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10016271 [exp]	2.0	0.8936
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10035934 [exp]	2.0	0.9056
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10011990 [exp]	2.8	0.8838
AT2G19760		PRF1, PFN1	profilin 1 (.1)		Lus10011138 [exp]	4.9	0.8856
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10017679 [exp]	5.5	0.8657
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10033913 [exp]	5.8	0.8416
AT2G41150			unknown protein		Lus10022403 [exp]	6.2	0.8699
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	7.5	0.9005
AT2G25280			unknown protein		Lus10001925 [exp]	7.7	0.8706

Compare expression of checked genes

Lus10010999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.