Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35658 70 / 8e-17 unknown protein AT5G07490 64 / 1e-13 unknown protein AT5G61630 57 / 3e-11 unknown protein AT4G16840 37 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000594 [exp] 96 / 6e-27 AT2G35658 79 / 1e-20 unknown protein Lus10032501 [exp] 59 / 1e-11 AT5G61630 129 / 2e-39 unknown protein Lus10042998 [exp] 56 / 2e-10 AT5G07490 117 / 2e-34 unknown protein Lus10019440 [exp] 39 / 0.0001 AT5G20045 63 / 9e-15 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081900 [exp] 72 / 1e-17 AT2G35658 84 / 3e-23 unknown protein Potri.001G152700 [exp] 67 / 1e-15 AT2G35658 81 / 1e-21 unknown protein Potri.001G080500 [exp] 62 / 4e-13 AT5G61630 155 / 2e-49 unknown protein Potri.008G015800 [exp] 45 / 5e-07 AT5G20045 57 / 3e-12 unknown protein Potri.008G015100 [exp] 42 / 7e-06 AT5G20045 52 / 3e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011000 pacid=23148690 polypeptide=Lus10011000 locus=Lus10011000.g ID=Lus10011000.BGIv1.0 annot-version=v1.0 ATGCAGAGATCGGCGAGCACCTCGCGGATCCCCTCCTCCTCCGCCGCGGCTGCCGAAGCCGAGTCGGCGATCTATTCCGCCTCGTCGGCGTTCGGTCTCC TTCCGACGTACGATCCGACCTCTCATGCTGCGAGGAAGGAGATTTCTCGAATCAGATCTGCGGAGAACGCCGTCCACTTCATTCCTCTCCTCCTCCTCGC CTCCGCTGTCATCCTCTGGTTCTTCTCCAGTCCTGACCGTATCGATTTGGGAGATTCGACTGCTCAAAGATTGAGCAACTCTACAGAGGTTCACTTGAAA TTGGCATGTTGGAGAATCTTGCTCAAAATCCGGCATAGCTATATTCCGGTCCGGTACTGCATTGGTCTGGTTGATCAGAATGTATGTAGAAATTAA
AA sequence Show only first row Show all	>Lus10011000 pacid=23148690 polypeptide=Lus10011000 locus=Lus10011000.g ID=Lus10011000.BGIv1.0 annot-version=v1.0 MQRSASTSRIPSSSAAAAEAESAIYSASSAFGLLPTYDPTSHAARKEISRIRSAENAVHFIPLLLLASAVILWFFSSPDRIDLGDSTAQRLSNSTEVHLK LACWRILLKIRHSYIPVRYCIGLVDQNVCRN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35658			unknown protein		Lus10011000 [exp]	0	1
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10011098 [exp]	5.5	0.8844
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Lus10034119 [exp]	14.4	0.8324
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10017374 [exp]	16.3	0.8600
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10000640 [exp]	20.3	0.8584
AT1G74940			Protein of unknown function (D...		Lus10011923 [exp]	35.3	0.8545
AT5G50175			unknown protein		Lus10043318 [exp]	36.7	0.8120
AT5G04660		CYP77A4	"cytochrome P450, family 77, s...		Lus10034156 [exp]	53.1	0.8365
AT2G01080			Late embryogenesis abundant (L...		Lus10005728 [exp]	58.0	0.8274
AT3G58670			Protein of unknown function (D...		Lus10017645 [exp]	62.8	0.7981
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10019788 [exp]	65.2	0.8152

Compare expression of checked genes

Lus10011000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.