Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35660 442 / 7e-154 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT2G29720 396 / 8e-136 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G05320 188 / 2e-55 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G38540 169 / 6e-48 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15760 126 / 4e-32 MO1 monooxygenase 1 (.1.2) AT4G15765 99 / 1e-23 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G11330 41 / 0.001 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000593 [exp] 591 / 0 AT2G35660 639 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) Lus10034475 [exp] 198 / 4e-59 AT5G05320 407 / 2e-140 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10019729 [exp] 196 / 3e-58 AT4G38540 400 / 4e-138 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033385 [exp] 191 / 4e-56 AT5G05320 284 / 3e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10025068 [exp] 189 / 1e-55 AT5G05320 410 / 1e-141 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033366 [exp] 183 / 2e-53 AT4G38540 284 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034467 [exp] 182 / 3e-53 AT4G38540 418 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034817 [exp] 182 / 6e-53 AT4G38540 290 / 8e-95 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034838 [exp] 182 / 1e-52 AT5G05320 285 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G152600 [exp] 446 / 6e-155 AT2G35660 658 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) Potri.019G003400 [exp] 189 / 1e-55 AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003600 [exp] 182 / 1e-52 AT4G38540 277 / 3e-89 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176950 [exp] 176 / 1e-50 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 174 / 3e-50 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003700 [exp] 173 / 2e-49 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003500 [exp] 171 / 9e-49 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G307500 [exp] 170 / 1e-48 AT4G38540 295 / 1e-96 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003800 [exp] 169 / 5e-48 AT5G05320 273 / 3e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003300 [exp] 167 / 2e-47 AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10011001 pacid=23148684 polypeptide=Lus10011001 locus=Lus10011001.g ID=Lus10011001.BGIv1.0 annot-version=v1.0 ATGGCTGCCACCATAGCTACTCCGTTCTCTTCTTCCATCTACCGTCGACCTCCAAGAAACAGCGTCGCAATCGCTAGAGCAATGAAATCCGGCGAGGAAG ATCTCAGTCGTCGTCGAGAGGATGTTGTAATCGTCGGTGCCGGGATTGCCGGACTCGCCACCGCCGTCTCTCTCAAGAGGCTTGGGATTAGGTCGGTAGT GCTTGAGCAGGCGGATTCGTTGAGGACTGGAGGAACATCGCTTACCCTTTTTAAGAACGGGTGGAAGGTTCTGGACGCCATTGGAGTTGCCGATGATCTC AGACCTCAGTTCCTCGAGATCCAAGGGATGGTGGTGAAATCACAAGACGGTAAACAGCTACGATCCTTTAGGTTCAAAGATGAAGATCAAAGCCAAGAAG TGCGTGCTGTGGAGAGGGGAATCCTGCTGGAAACACTTGCGAACCAGCTGCCACCAGAATCGATTCGGTTCTCTTCAAAGCTGGCCAAGATCGAGACTAA AGACAACGCTGGCTCAACTCTTCTGCAACTCACGGATGGGACGGAGGTACTTGCAAATATCGTTGTTGCCTGTGATGGCATCCGATCCCCGGTGGCGAAT TGGATGGGGTTCCCGGAAGCTAAATATTCAGGACATTGTGCATTCCGAGGCCTCGGAGTTTACGAGAATGGGCACCCGTTCGAGCCAAAGGTGAACTATG TCTATGGAAGAGGAATCCGTGCAGGGTATGTCCCAGTTTCGGAGACGAAGGTCTACTGGTTCGTCTGCTTCAACAGTCCTTCCCTAGGTCCAAGAATAAC AGACCCATCTGAGCTAAAGAAACAAGCCAAAGACTTGGTGAAGAGCTGGCCATCCGAGCTCCAAAACCTGATAGACATAACCCCAGGCGAAACCCTAAGC AGAACTCCGCTCGTCGATCGCTGGCTCTGGCCAGTGATCACCCCACCGCCATCAAAAAGGAGGCATAGTTCTCGTCGGGGACGCTTGGCACCCCATGACC CCGAACCTAGGACAAGGTGGGTGCTGTGCATTAGAGGACTCTATCGTCCTAGCGCGAAAGCTCGCTGCTGCAATGAAGTCAGACCCGCCAATATTCTCTT CTTCTTCTTCAGAAGCCGTGGAACAAGCCTTCAAATCGTATGGGGACGAGAGATGGCCTCGTGTATTTCCATTGACAGTTCGGGCGAATGTGGTTGGATC GCTGTTGCAGTGGGAGAATCCTGTGGTCTGTGCAGTCAGGAACGGTGTTGTGATTCCTAA
AA sequence Show only first row Show all	>Lus10011001 pacid=23148684 polypeptide=Lus10011001 locus=Lus10011001.g ID=Lus10011001.BGIv1.0 annot-version=v1.0 MAATIATPFSSSIYRRPPRNSVAIARAMKSGEEDLSRRREDVVIVGAGIAGLATAVSLKRLGIRSVVLEQADSLRTGGTSLTLFKNGWKVLDAIGVADDL RPQFLEIQGMVVKSQDGKQLRSFRFKDEDQSQEVRAVERGILLETLANQLPPESIRFSSKLAKIETKDNAGSTLLQLTDGTEVLANIVVACDGIRSPVAN WMGFPEAKYSGHCAFRGLGVYENGHPFEPKVNYVYGRGIRAGYVPVSETKVYWFVCFNSPSLGPRITDPSELKKQAKDLVKSWPSELQNLIDITPGETLS RTPLVDRWLWPVITPPPSKRRHSSRRGRLAPHDPEPRTRWVLCIRGLYRPSAKARCCNEVRPANILFFFFRSRGTSLQIVWGREMASCISIDSSGECGWI AVAVGESCGLCSQERCCDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10011001 [exp]	0	1
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10020002 [exp]	1.4	0.9260
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10015530 [exp]	2.0	0.9100
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10029126 [exp]	2.4	0.9032
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	2.8	0.9065
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029512 [exp]	3.0	0.9072
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10021717 [exp]	5.5	0.8691
AT5G45850			Protein of unknown function (D...		Lus10015280 [exp]	6.7	0.8875
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10015531 [exp]	7.7	0.8897
AT1G33110			MATE efflux family protein (.1...		Lus10020307 [exp]	8.4	0.9018
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10014382 [exp]	9.0	0.8949

Compare expression of checked genes

Lus10011001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.