Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44800 197 / 1e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07480 194 / 3e-59 KUOX1 KAR-UP oxidoreductase 1 (.1) AT3G60290 193 / 7e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G36690 183 / 5e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 150 / 2e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 136 / 2e-37 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 134 / 2e-36 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20400 102 / 7e-25 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 100 / 4e-24 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G22880 100 / 1e-23 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032502 [exp] 214 / 8e-67 AT5G07480 396 / 3e-138 KAR-UP oxidoreductase 1 (.1) Lus10023890 [exp] 172 / 2e-50 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 169 / 2e-49 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 144 / 4e-40 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035782 [exp] 140 / 1e-38 AT5G24530 258 / 4e-84 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 139 / 3e-38 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 129 / 8e-35 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10024882 [exp] 128 / 4e-34 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10042999 [exp] 114 / 8e-31 AT5G07480 183 / 6e-58 KAR-UP oxidoreductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G080600 [exp] 242 / 7e-78 AT5G07480 453 / 9e-161 KAR-UP oxidoreductase 1 (.1) Potri.008G029700 [exp] 175 / 7e-52 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G231500 [exp] 165 / 7e-48 AT2G36690 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 153 / 9e-44 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 148 / 8e-42 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 148 / 1e-41 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 145 / 8e-41 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048900 [exp] 143 / 1e-39 AT2G36690 250 / 5e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 142 / 1e-39 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048700 [exp] 140 / 1e-38 AT2G36690 255 / 3e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10011002 pacid=23148697 polypeptide=Lus10011002 locus=Lus10011002.g ID=Lus10011002.BGIv1.0 annot-version=v1.0 ATGGAGGTTTCACCAGCTCCAACCATCGACTTCACCCATCTCCTCAGCTCAGCCAACCCCGAAACCAAATCAGAAGCCATTTCCCAAATCGCCGTCGCCT GCAAATCCTTCGGCTTCTTCAATGTGATTAACCACGGAATCAGCGACGAAACGGTGCTCGGAGCGGTCGAATCCAACGCCAAGTTCTTCGATTCGCCATC GGAGGAGAAAGAGGAGTTCCAATCCGGCGACGTCAGAAGGCCGGTGAGATTCGGTACGCTCGCTGCACAGAGCAAGCTAAGAAATGGTGATGGTGGGACT TTTGCTAGGGATTTCCTCAAGCTCTATGGCTTCCCCTTGGAGGATTGGATCGGGTTCTGGCCAAAAAACCCGCCCGATTACAGGTTGAAAATGGGGAGAT ACACTAAGGAAGCAAGAAACCTAAGCCTCTGTCTATTCGAATCGATACTCGAAAGCCTCGACATAGACCCAACCCCATTCATACAAAAGCTAACCTCTGA AGGCATGCAAATGATGGCTGTAAACCATTACCATACTGGGTTGATTGGTTCCGGTTCGACCCAAACCGGCATTCCTCCCCATACAGACTTCTCCTTGATC ACTGTTCTGCTCCAGACCAAACCAGGCCTCCATGTCTTCGACCCGACCGAAGGGAAATGGAAAGATGCCCCGGGATCAAGTTCGTCGATGCAGGTACTCG TTGGGGATCATCTCGAGGTTCTGAGCAATGGAAGGTGCAAGGCAGCTGTGCATCGTGCAGCCTGCGGCACGAACTCCGAGGAGTTCACGAGTAGGATTTC TGTGGCGAGCCTGCTTACCTTCGGGTTCGATGAAGTGGTTGAACCGGTTTTGGTGACGAAAAATCAAGAAGAAGTTGGGAAGAGTTTGTACAAGGGTAGT AGCTTGAGGGAGTTTCTTGAGTACCTTTCATCTGGAGAAAAACTACCCTTCATTGACACTCTTAAGGTTTGTTGA
AA sequence Show only first row Show all	>Lus10011002 pacid=23148697 polypeptide=Lus10011002 locus=Lus10011002.g ID=Lus10011002.BGIv1.0 annot-version=v1.0 MEVSPAPTIDFTHLLSSANPETKSEAISQIAVACKSFGFFNVINHGISDETVLGAVESNAKFFDSPSEEKEEFQSGDVRRPVRFGTLAAQSKLRNGDGGT FARDFLKLYGFPLEDWIGFWPKNPPDYRLKMGRYTKEARNLSLCLFESILESLDIDPTPFIQKLTSEGMQMMAVNHYHTGLIGSGSTQTGIPPHTDFSLI TVLLQTKPGLHVFDPTEGKWKDAPGSSSSMQVLVGDHLEVLSNGRCKAAVHRAACGTNSEEFTSRISVASLLTFGFDEVVEPVLVTKNQEEVGKSLYKGS SLREFLEYLSSGEKLPFIDTLKVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44800			2-oxoglutarate (2OG) and Fe(II...		Lus10011002 [exp]	0	1
AT5G54000			2-oxoglutarate (2OG) and Fe(II...		Lus10008822 [exp]	5.3	0.7670
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031254 [exp]	11.8	0.7511
AT1G01390			UDP-Glycosyltransferase superf...		Lus10037115 [exp]	13.7	0.7464
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10042122 [exp]	21.2	0.7099
AT1G18180			Protein of unknown function (D...		Lus10009061 [exp]	26.1	0.6708
AT1G69160			unknown protein		Lus10004639 [exp]	27.8	0.6656
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10037266 [exp]	38.7	0.7124
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008999 [exp]	42.7	0.6927
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039487 [exp]	45.6	0.7040
AT4G38840			SAUR-like auxin-responsive pro...		Lus10025911 [exp]	45.7	0.7060

Compare expression of checked genes

Lus10011002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.